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2Z7U
Asym. Unit
Info
Asym.Unit (56 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF H2O2 TREATED CU,ZN-SOD
Authors
:
S. Ito, T. Ishii, K. Uchida
Date
:
28 Aug 07 (Deposition) - 02 Sep 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Metalloprotein, Dismutase, Acetylation, Antioxidant, Copper, Cytoplasm, Metal-Binding, Oxidoreductase, Zinc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ito, T. Ishii, K. Uchida
Crystal Structures Of H2O2-Treated Cu, Zn-Superoxide Dismutase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
2
Ligand/Ion
COPPER (II) ION
2
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:61 , HIS A:69 , HIS A:78 , ASP A:81
BINDING SITE FOR RESIDUE ZN A 300
2
AC2
SOFTWARE
HIS A:44 , HIS A:46 , HIS A:61 , HIS A:118
BINDING SITE FOR RESIDUE CU A 301
3
AC3
SOFTWARE
HIS B:61 , HIS B:69 , HIS B:78 , ASP B:81
BINDING SITE FOR RESIDUE ZN B 300
4
AC4
SOFTWARE
HIS B:44 , HIS B:46 , HIS B:61 , HIS B:118
BINDING SITE FOR RESIDUE CU B 301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: SOD_CU_ZN_1 (A:42-52,B:42-52)
2: SOD_CU_ZN_2 (A:136-147,B:136-147)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_CU_ZN_1
PS00087
Copper/Zinc superoxide dismutase signature 1.
SODC_BOVIN
43-53
2
A:42-52
B:42-52
2
SOD_CU_ZN_2
PS00332
Copper/Zinc superoxide dismutase signature 2.
SODC_BOVIN
137-148
2
A:136-147
B:136-147
[
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Exons
(5, 10)
Info
All Exons
Exon 1.1 (A:1-23 | B:1-23)
Exon 1.2 (A:24-54 | B:24-54)
Exon 1.3 (A:54-77 | B:54-77)
Exon 1.4 (A:77-116 | B:77-116)
Exon 1.5 (A:117-151 | B:117-151)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000032452
1
ENSBTAE00000259570
chr1:
2920927-2920763
165
SODC_BOVIN
1-24
24
2
A:1-23
B:1-23
23
23
1.2
ENSBTAT00000032452
2
ENSBTAE00000204052
chr1:
2917164-2917074
91
SODC_BOVIN
25-55
31
2
A:24-54
B:24-54
31
31
1.3
ENSBTAT00000032452
3
ENSBTAE00000204053
chr1:
2915376-2915307
70
SODC_BOVIN
55-78
24
2
A:54-77
B:54-77
24
24
1.4
ENSBTAT00000032452
4
ENSBTAE00000204054
chr1:
2914479-2914362
118
SODC_BOVIN
78-117
40
2
A:77-116
B:77-116
40
40
1.5
ENSBTAT00000032452
5
ENSBTAE00000204055
chr1:
2912760-2912336
425
SODC_BOVIN
118-152
35
2
A:117-151
B:117-151
35
35
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2z7ua_ (A:)
1b: SCOP_d2z7ub_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cu,Zn superoxide dismutase-like
(165)
Family
:
Cu,Zn superoxide dismutase-like
(158)
Protein domain
:
Cu,Zn superoxide dismutase, SOD
(134)
Cow (Bos taurus) [TaxId: 9913]
(23)
1a
d2z7ua_
A:
1b
d2z7ub_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2z7uA00 (A:1-151)
1b: CATH_2z7uB00 (B:1-151)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.200, no name defined]
(125)
Bovine (Bos taurus)
(5)
1a
2z7uA00
A:1-151
1b
2z7uB00
B:1-151
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Sod_Cu_2z7uB01 (B:4-147)
1b: PFAM_Sod_Cu_2z7uB02 (B:4-147)
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Clan
:
no clan defined [family: Sod_Cu]
(71)
Family
:
Sod_Cu
(71)
Bos taurus (Bovine)
(12)
1a
Sod_Cu-2z7uB01
B:4-147
1b
Sod_Cu-2z7uB02
B:4-147
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Asymmetric Unit 1
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