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2Z7H
Asym. Unit
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Asym.Unit (120 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
S. CEREVISIAE GERANYLGERANYL PYROPHOSPHATE SYNTHASE IN COMPLEX WITH INHIBITOR BPH-210
Authors
:
R. Cao, C. K. -M. Chen, R. -T. Guo, M. Hudock, A. H. -J. Wang, E. Oldfield
Date
:
23 Aug 07 (Deposition) - 06 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Prenyltransferase, Geranylgeranyl Pyrophosphate, Bisphosphonate, Carotenoid Biosynthesis, Cytoplasm, Isoprene Biosynthesis, Multifunctional Enzyme, Protein Transport, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Cao, C. K. Chen, R. T. Guo, A. H. Wang, E. Oldfield
Structures Of A Potent Phenylalkyl Bisphosphonate Inhibitor Bound To Farnesyl And Geranylgeranyl Diphosphate Synthases.
Proteins V. 73 431 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: {1-HYDROXY-3-[METHYL(4-PHENYLBUTYL... (GG3a)
1b: {1-HYDROXY-3-[METHYL(4-PHENYLBUTYL... (GG3b)
2a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
GG3
2
Ligand/Ion
{1-HYDROXY-3-[METHYL(4-PHENYLBUTYL)AMINO]PROPANE-1,1-DIYL}BIS(PHOSPHONIC ACID)
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:80 , ASP A:84 , GG3 A:1302 , HOH A:1398 , HOH A:1605
BINDING SITE FOR RESIDUE MG A1301
2
AC2
SOFTWARE
ARG A:44 , HIS A:73 , ASP A:80 , ASP A:84 , ARG A:89 , LYS A:174 , GLN A:211 , ASP A:214 , LYS A:238 , MG A:1301 , HOH A:1398 , HOH A:1443 , HOH A:1605 , HOH A:1621
BINDING SITE FOR RESIDUE GG3 A1302
3
AC3
SOFTWARE
HIS B:73 , ASP B:80 , ASP B:84 , ARG B:89 , LYS B:174 , LEU B:178 , TYR B:210 , GLN B:211 , ASP B:214 , LYS B:238 , HOH B:432 , HOH B:534
BINDING SITE FOR RESIDUE GG3 B 341
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: POLYPRENYL_SYNTHASE_1 (A:77-91,B:77-91)
2: POLYPRENYL_SYNTHASE_2 (A:206-218,B:206-218)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POLYPRENYL_SYNTHASE_1
PS00723
Polyprenyl synthases signature 1.
GGPPS_YEAST
72-86
2
A:77-91
B:77-91
2
POLYPRENYL_SYNTHASE_2
PS00444
Polyprenyl synthases signature 2.
GGPPS_YEAST
201-213
2
A:206-218
B:206-218
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:6-338 (gaps) | B:6-314 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YPL069C
1
YPL069C.1
XVI:423889-422882
1008
GGPPS_YEAST
1-335
335
2
A:6-338 (gaps)
B:6-314 (gaps)
333
309
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_polyprenyl_synt_2z7hB01 (B:28-282)
1b: PFAM_polyprenyl_synt_2z7hB02 (B:28-282)
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)
(
)
Clan
:
no clan defined [family: polyprenyl_synt]
(86)
Family
:
polyprenyl_synt
(86)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(12)
1a
polyprenyl_synt-2z7hB01
B:28-282
1b
polyprenyl_synt-2z7hB02
B:28-282
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