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Getting 'Hetero Component' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
2Z7F
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (48 KB)
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Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN NEUTROPHIL ELASTASE WITH 1/2SLPI
Authors
:
M. Takimoto-Kamimura, K. Fukushima
Date
:
20 Aug 07 (Deposition) - 26 Aug 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : E,I
Biol. Unit 1: E,I (1x)
Keywords
:
Serine Protease, Serine Protease Inhibitor, Disease Mutation, Glycoprotein, Hydrolase, Zymogen, Secreted, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Koizumi, A. Fujino, K. Fukushima, T. Kamimura, M. Takimoto-Kamimura
Complex Of Human Neutrophil Elastase With 1/2Slpi
J. Synchrotron Radiat. V. 15 308 2008
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
1b: ALPHA-L-FUCOSE (FUCb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA E:84 , ASN E:109 , HOH E:434
BINDING SITE FOR RESIDUE NAG E 1
2
AC2
SOFTWARE
ARG E:63 , ARG E:65A , HOH E:435 , HOH E:436 , CYS I:101 , SER I:103
BINDING SITE FOR RESIDUE FUC E 2
3
AC3
SOFTWARE
ASN E:159 , HOH E:432 , HOH E:439
BINDING SITE FOR RESIDUE NAG E 4
4
AC4
SOFTWARE
TRP E:27 , GLN E:135 , CYS E:201 , ASN E:204 , GLY E:205 , HOH E:438 , HOH E:439
BINDING SITE FOR RESIDUE FUC E 5
[
close Site info
]
SAPs(SNPs)/Variants
(85, 85)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_070696 (P28L, chain E, )
02: VAR_070697 (F29L, chain E, )
03: VAR_070698 (M30R, chain E, )
04: VAR_070699 (V31E, chain E, )
05: VAR_070700 (V31L, chain E, )
06: VAR_070701 (S32C, chain E, )
07: VAR_070702 (S32F, chain E, )
08: VAR_070703 (L33P, chain E, )
09: VAR_070704 (L33R, chain E, )
10: VAR_070705 (L35P, chain E, )
11: VAR_070706 (H40L, chain E, )
12: VAR_070707 (H40Q, chain E, )
13: VAR_070708 (H40Y, chain E, )
14: VAR_070709 (C42S, chain E, )
15: VAR_038609 (C42Y, chain E, )
16: VAR_070710 (G43R, chain E, )
17: VAR_070711 (A44S, chain E, )
18: VAR_038610 (A44T, chain E, )
19: VAR_070712 (A44V, chain E, )
20: VAR_070713 (L46P, chain E, )
21: VAR_038611 (I47T, chain E, )
22: VAR_070715 (A48V, chain E, )
23: VAR_070718 (S54W, chain E, )
24: VAR_070719 (C58F, chain E, )
25: VAR_038612 (C58R, chain E, )
26: VAR_038613 (C58S, chain E, )
27: VAR_070720 (C58Y, chain E, )
28: VAR_070721 (V59G, chain E, )
29: VAR_070722 (V65G, chain E, )
30: VAR_070724 (V66M, chain E, )
31: VAR_070725 (L68P, chain E, )
32: VAR_038614 (G69E, chain E, )
33: VAR_070726 (G69R, chain E, )
34: VAR_070727 (Q81L, chain E, )
35: VAR_038615 (V82L, chain E, )
36: VAR_070728 (V82M, chain E, )
37: VAR_038616 (V85L, chain E, )
38: VAR_038617 (V85M, chain E, )
39: VAR_070729 (R87L, chain E, )
40: VAR_070730 (R87P, chain E, )
41: VAR_070731 (I88N, chain E, )
42: VAR_070732 (I103V, chain E, )
43: VAR_070733 (I105F, chain E, )
44: VAR_070734 (I105N, chain E, )
45: VAR_070735 (I105S, chain E, )
46: VAR_070736 (L106P, chain E, )
47: VAR_070737 (L108H, chain E, )
48: VAR_070738 (N109I, chain E, )
49: VAR_070739 (G110R, chain E, )
50: VAR_038619 (S111L, chain E, )
51: VAR_070740 (A112D, chain E, )
52: VAR_070741 (A112P, chain E, )
53: VAR_070742 (A116T, chain E, )
54: VAR_070743 (V120M, chain E, )
55: VAR_070744 (A121D, chain E, )
56: VAR_038620 (P124L, chain E, )
57: VAR_070745 (P124R, chain E, )
58: VAR_070746 (R128H, chain E, )
59: VAR_070747 (C136F, chain E, )
60: VAR_038621 (C136S, chain E, )
61: VAR_070748 (C136W, chain E, )
62: VAR_070749 (C136Y, chain E, )
63: VAR_070750 (L137P, chain E, )
64: VAR_070751 (A138D, chain E, )
65: VAR_070752 (A138P, chain E, )
66: VAR_070753 (W141C, chain E, )
67: VAR_070754 (W141R, chain E, )
68: VAR_064513 (A152T, chain E, )
69: VAR_070755 (G196C, chain E, )
70: VAR_070756 (G196R, chain E, )
71: VAR_038623 (P198R, chain E, )
72: VAR_070757 (L199F, chain E, )
73: VAR_070758 (L199S, chain E, )
74: VAR_070759 (C201G, chain E, )
75: VAR_070760 (N204I, chain E, )
76: VAR_038624 (G205V, chain E, )
77: VAR_070761 (G205W, chain E, )
78: VAR_070762 (G211E, chain E, )
79: VAR_038625 (G211R, chain E, )
80: VAR_019237 (V216I, chain E, )
81: VAR_070764 (A229P, chain E, )
82: VAR_070765 (V231E, chain E, )
83: VAR_070766 (V231G, chain E, )
84: VAR_070723 (R65AP, chain E, )
85: VAR_070763 (R217AQ, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_070696
P
42
L
ELNE_HUMAN
Disease (SCN1)
---
E
P
28
L
02
UniProt
VAR_070697
F
43
L
ELNE_HUMAN
Disease (SCN1)
---
E
F
29
L
03
UniProt
VAR_070698
M
44
R
ELNE_HUMAN
Disease (SCN1)
---
E
M
30
R
04
UniProt
VAR_070699
V
45
E
ELNE_HUMAN
Disease (SCN1)
---
E
V
31
E
05
UniProt
VAR_070700
V
45
L
ELNE_HUMAN
Disease (CH)
---
E
V
31
L
06
UniProt
VAR_070701
S
46
C
ELNE_HUMAN
Disease (SCN1)
---
E
S
32
C
07
UniProt
VAR_070702
S
46
F
ELNE_HUMAN
Disease (SCN1)
---
E
S
32
F
08
UniProt
VAR_070703
L
47
P
ELNE_HUMAN
Disease (SCN1)
---
E
L
33
P
09
UniProt
VAR_070704
L
47
R
ELNE_HUMAN
Disease (SCN1)
---
E
L
33
R
10
UniProt
VAR_070705
L
49
P
ELNE_HUMAN
Disease (SCN1)
---
E
L
35
P
11
UniProt
VAR_070706
H
53
L
ELNE_HUMAN
Disease (SCN1)
---
E
H
40
L
12
UniProt
VAR_070707
H
53
Q
ELNE_HUMAN
Disease (CH)
---
E
H
40
Q
13
UniProt
VAR_070708
H
53
Y
ELNE_HUMAN
Disease (SCN1)
---
E
H
40
Y
14
UniProt
VAR_070709
C
55
S
ELNE_HUMAN
Disease (SCN1)
---
E
C
42
S
15
UniProt
VAR_038609
C
55
Y
ELNE_HUMAN
Disease (SCN1)
---
E
C
42
Y
16
UniProt
VAR_070710
G
56
R
ELNE_HUMAN
Disease (SCN1)
---
E
G
43
R
17
UniProt
VAR_070711
A
57
S
ELNE_HUMAN
Disease (SCN1)
---
E
A
44
S
18
UniProt
VAR_038610
A
57
T
ELNE_HUMAN
Disease (SCN1)
---
E
A
44
T
19
UniProt
VAR_070712
A
57
V
ELNE_HUMAN
Disease (SCN1)
---
E
A
44
V
20
UniProt
VAR_070713
L
59
P
ELNE_HUMAN
Disease (SCN1)
---
E
L
46
P
21
UniProt
VAR_038611
I
60
T
ELNE_HUMAN
Disease (SCN1)
---
E
I
47
T
22
UniProt
VAR_070715
A
61
V
ELNE_HUMAN
Disease (SCN1)
---
E
A
48
V
23
UniProt
VAR_070718
S
67
W
ELNE_HUMAN
Disease (SCN1)
---
E
S
54
W
24
UniProt
VAR_070719
C
71
F
ELNE_HUMAN
Disease (SCN1)
---
E
C
58
F
25
UniProt
VAR_038612
C
71
R
ELNE_HUMAN
Disease (SCN1)
28931611
E
C
58
R
26
UniProt
VAR_038613
C
71
S
ELNE_HUMAN
Disease (SCN1)
---
E
C
58
S
27
UniProt
VAR_070720
C
71
Y
ELNE_HUMAN
Disease (SCN1)
---
E
C
58
Y
28
UniProt
VAR_070721
V
72
G
ELNE_HUMAN
Disease (SCN1)
---
E
V
59
G
29
UniProt
VAR_070722
V
80
G
ELNE_HUMAN
Disease (SCN1)
---
E
V
65
G
30
UniProt
VAR_070724
V
82
M
ELNE_HUMAN
Disease (SCN1)
---
E
V
66
M
31
UniProt
VAR_070725
L
84
P
ELNE_HUMAN
Disease (SCN1)
---
E
L
68
P
32
UniProt
VAR_038614
G
85
E
ELNE_HUMAN
Disease (SCN1)
---
E
G
69
E
33
UniProt
VAR_070726
G
85
R
ELNE_HUMAN
Disease (SCN1)
---
E
G
69
R
34
UniProt
VAR_070727
Q
97
L
ELNE_HUMAN
Disease (CH)
---
E
Q
81
L
35
UniProt
VAR_038615
V
98
L
ELNE_HUMAN
Disease (SCN1)
---
E
V
82
L
36
UniProt
VAR_070728
V
98
M
ELNE_HUMAN
Disease (SCN1)
---
E
V
82
M
37
UniProt
VAR_038616
V
101
L
ELNE_HUMAN
Disease (SCN1)
---
E
V
85
L
38
UniProt
VAR_038617
V
101
M
ELNE_HUMAN
Disease (SCN1)
28929494
E
V
85
M
39
UniProt
VAR_070729
R
103
L
ELNE_HUMAN
Disease (SCN1)
---
E
R
87
L
40
UniProt
VAR_070730
R
103
P
ELNE_HUMAN
Disease (SCN1)
---
E
R
87
P
41
UniProt
VAR_070731
I
104
N
ELNE_HUMAN
Disease (CH)
---
E
I
88
N
42
UniProt
VAR_070732
I
118
V
ELNE_HUMAN
Polymorphism
---
E
I
103
V
43
UniProt
VAR_070733
I
120
F
ELNE_HUMAN
Disease (SCN1)
---
E
I
105
F
44
UniProt
VAR_070734
I
120
N
ELNE_HUMAN
Disease (SCN1)
---
E
I
105
N
45
UniProt
VAR_070735
I
120
S
ELNE_HUMAN
Disease (SCN1)
---
E
I
105
S
46
UniProt
VAR_070736
L
121
P
ELNE_HUMAN
Disease (SCN1)
---
E
L
106
P
47
UniProt
VAR_070737
L
123
H
ELNE_HUMAN
Disease (SCN1)
---
E
L
108
H
48
UniProt
VAR_070738
N
124
I
ELNE_HUMAN
Disease (SCN1)
---
E
N
109
I
49
UniProt
VAR_070739
G
125
R
ELNE_HUMAN
Polymorphism
---
E
G
110
R
50
UniProt
VAR_038619
S
126
L
ELNE_HUMAN
Disease (SCN1)
137854450
E
S
111
L
51
UniProt
VAR_070740
A
127
D
ELNE_HUMAN
Disease (SCN1)
---
E
A
112
D
52
UniProt
VAR_070741
A
127
P
ELNE_HUMAN
Disease (SCN1)
---
E
A
112
P
53
UniProt
VAR_070742
A
131
T
ELNE_HUMAN
Unclassified
---
E
A
116
T
54
UniProt
VAR_070743
V
135
M
ELNE_HUMAN
Polymorphism
---
E
V
120
M
55
UniProt
VAR_070744
A
136
D
ELNE_HUMAN
Disease (SCN1)
---
E
A
121
D
56
UniProt
VAR_038620
P
139
L
ELNE_HUMAN
Disease (SCN1)
28929493
E
P
124
L
57
UniProt
VAR_070745
P
139
R
ELNE_HUMAN
Disease (SCN1)
---
E
P
124
R
58
UniProt
VAR_070746
R
143
H
ELNE_HUMAN
Unclassified
200993994
E
R
128
H
59
UniProt
VAR_070747
C
151
F
ELNE_HUMAN
Disease (SCN1)
---
E
C
136
F
60
UniProt
VAR_038621
C
151
S
ELNE_HUMAN
Disease (SCN1)
---
E
C
136
S
61
UniProt
VAR_070748
C
151
W
ELNE_HUMAN
Disease (SCN1)
---
E
C
136
W
62
UniProt
VAR_070749
C
151
Y
ELNE_HUMAN
Unclassified
57246956
E
C
136
Y
63
UniProt
VAR_070750
L
152
P
ELNE_HUMAN
Disease (SCN1)
---
E
L
137
P
64
UniProt
VAR_070751
A
153
D
ELNE_HUMAN
Disease (SCN1)
---
E
A
138
D
65
UniProt
VAR_070752
A
153
P
ELNE_HUMAN
Disease (SCN1)
---
E
A
138
P
66
UniProt
VAR_070753
W
156
C
ELNE_HUMAN
Disease (SCN1)
---
E
W
141
C
67
UniProt
VAR_070754
W
156
R
ELNE_HUMAN
Disease (SCN1)
---
E
W
141
R
68
UniProt
VAR_064513
A
166
T
ELNE_HUMAN
Disease (SCN1)
201788817
E
A
152
T
69
UniProt
VAR_070755
G
203
C
ELNE_HUMAN
Disease (SCN1)
---
E
G
196
C
70
UniProt
VAR_070756
G
203
R
ELNE_HUMAN
Disease (SCN1)
---
E
G
196
R
71
UniProt
VAR_038623
P
205
R
ELNE_HUMAN
Disease (SCN1)
---
E
P
198
R
72
UniProt
VAR_070757
L
206
F
ELNE_HUMAN
Disease (CH)
---
E
L
199
F
73
UniProt
VAR_070758
L
206
S
ELNE_HUMAN
Disease (SCN1)
---
E
L
199
S
74
UniProt
VAR_070759
C
208
G
ELNE_HUMAN
Disease (SCN1)
---
E
C
201
G
75
UniProt
VAR_070760
N
209
I
ELNE_HUMAN
Disease (CH)
---
E
N
204
I
76
UniProt
VAR_038624
G
210
V
ELNE_HUMAN
Disease (SCN1)
---
E
G
205
V
77
UniProt
VAR_070761
G
210
W
ELNE_HUMAN
Disease (CH)
---
E
G
205
W
78
UniProt
VAR_070762
G
214
E
ELNE_HUMAN
Disease (SCN1)
---
E
G
211
E
79
UniProt
VAR_038625
G
214
R
ELNE_HUMAN
Disease (SCN1)
---
E
G
211
R
80
UniProt
VAR_019237
V
219
I
ELNE_HUMAN
Unclassified
17216656
E
V
216
I
81
UniProt
VAR_070764
A
233
P
ELNE_HUMAN
Disease (SCN1)
---
E
A
229
P
82
UniProt
VAR_070765
V
235
E
ELNE_HUMAN
Disease (SCN1)
---
E
V
231
E
83
UniProt
VAR_070766
V
235
G
ELNE_HUMAN
Disease (SCN1)
---
E
V
231
G
84
UniProt
VAR_070723
R
81
P
ELNE_HUMAN
Disease (SCN1)
---
E
R
65A
P
85
UniProt
VAR_070763
R
220
Q
ELNE_HUMAN
Disease (SCN1)
---
E
R
217A
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (E:16-243)
2: TRYPSIN_HIS (E:53-58)
3: TRYPSIN_SER (E:189-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
ELNE_HUMAN
30-247
1
E:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
ELNE_HUMAN
66-71
1
E:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
ELNE_HUMAN
196-207
1
E:189-200
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.2 (E:16-62 (gaps))
Exon 1.3 (E:62-107 (gaps))
Exon 1.4 (E:108-192 (gaps))
Exon 1.5 (E:193-243 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000263621
1
ENSE00000892229
chr19:
852291-852395
105
ELNE_HUMAN
1-23
23
0
-
-
1.2
ENST00000263621
2
ENSE00000768824
chr19:
852876-853032
157
ELNE_HUMAN
23-75
53
1
E:16-62 (gaps)
47
1.3
ENST00000263621
3
ENSE00000768826
chr19:
853262-853403
142
ELNE_HUMAN
75-122
48
1
E:62-107 (gaps)
51
1.4
ENST00000263621
4
ENSE00000768828
chr19:
855564-855794
231
ELNE_HUMAN
123-199
77
1
E:108-192 (gaps)
87
1.5
ENST00000263621
5
ENSE00000892230
chr19:
855958-856242
285
ELNE_HUMAN
200-267
68
1
E:193-243 (gaps)
52
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2z7fe_ (E:)
2a: SCOP_d2z7fi_ (I:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
automated matches
(162)
Human (Homo sapiens) [TaxId: 9606]
(132)
1a
d2z7fe_
E:
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
Elafin-like
(4)
Family
:
automated matches
(1)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d2z7fi_
I:
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2z7fI00 (I:58-107)
2a: CATH_2z7fE01 (E:16-27,E:121-232)
2b: CATH_2z7fE02 (E:28-120,E:233-243)
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Organisms
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)
(
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Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
R-elafin
(4)
Homologous Superfamily
:
R-elafin
(4)
Human (Homo sapiens)
(2)
1a
2z7fI00
I:58-107
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
2a
2z7fE01
E:16-27,E:121-232
2b
2z7fE02
E:28-120,E:233-243
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
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