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2Z5Z
Asym. Unit
Info
Asym.Unit (108 KB)
Biol.Unit 1 (101 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF BUFFALO LACTOPEROXIDASE WITH FLUORIDE ION AT 3.5A RESOLUTION
Authors
:
I. A. Sheikh, R. Jain, N. Singh, S. Sharma, A. Bhushan, P. Kaur, A. Sriniv T. P. Singh
Date
:
20 Jul 07 (Deposition) - 14 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Complex, Buffalo, Lactoperoxidase, Fluoride, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. A. Sheikh, R. Jain, N. Singh, S. Sharma, A. Bhushan, P. Kaur, A. Srinivasan, T. P. Singh
Crystal Structure Of The Complex Of Buffalo Lactoperoxidase With Fluoride Ion At 3. 5A Resolution
To Be Published
[
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Hetero Components
(8, 26)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: FLUORIDE ION (Fa)
2b: FLUORIDE ION (Fb)
2c: FLUORIDE ION (Fc)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4a: IODIDE ION (IODa)
4b: IODIDE ION (IODb)
4c: IODIDE ION (IODc)
4d: IODIDE ION (IODd)
4e: IODIDE ION (IODe)
4f: IODIDE ION (IODf)
4g: IODIDE ION (IODg)
4h: IODIDE ION (IODh)
4i: IODIDE ION (IODi)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7a: 1-(OXIDOSULFANYL)METHANAMINE (OSMa)
8a: PHOSPHOSERINE (SEPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
F
3
Ligand/Ion
FLUORIDE ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
IOD
9
Ligand/Ion
IODIDE ION
5
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
OSM
1
Ligand/Ion
1-(OXIDOSULFANYL)METHANAMINE
8
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:95 , PRO A:209 , ARG A:504 , NAG A:597
BINDING SITE FOR RESIDUE NAG A 596
02
AC2
SOFTWARE
NAG A:596 , MAN A:598
BINDING SITE FOR RESIDUE NAG A 597
03
AC3
SOFTWARE
NAG A:597
BINDING SITE FOR RESIDUE MAN A 598
04
AC4
SOFTWARE
ASN A:205 , SER A:208 , ALA A:214 , VAL A:215 , GLN A:217 , NAG A:600
BINDING SITE FOR RESIDUE NAG A 599
05
AC5
SOFTWARE
NAG A:599
BINDING SITE FOR RESIDUE NAG A 600
06
AC6
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , LYS A:388 , NAG A:602
BINDING SITE FOR RESIDUE NAG A 601
07
AC7
SOFTWARE
NAG A:601 , MAN A:603
BINDING SITE FOR RESIDUE NAG A 602
08
AC8
SOFTWARE
NAG A:602
BINDING SITE FOR RESIDUE MAN A 603
09
AC9
SOFTWARE
ASN A:332 , VAL A:335 , NAG A:605
BINDING SITE FOR RESIDUE NAG A 604
10
BC1
SOFTWARE
NAG A:604
BINDING SITE FOR RESIDUE NAG A 605
11
BC2
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
BINDING SITE FOR RESIDUE CA A 606
12
BC3
SOFTWARE
ASN A:341 , VAL A:342 , MET A:446
BINDING SITE FOR RESIDUE IOD A 607
13
BC4
SOFTWARE
ASN A:80
BINDING SITE FOR RESIDUE IOD A 608
14
BC5
SOFTWARE
ARG A:506 , HOH A:705
BINDING SITE FOR RESIDUE IOD A 609
15
BC6
SOFTWARE
ARG A:202
BINDING SITE FOR RESIDUE IOD A 610
16
BC7
SOFTWARE
ASN A:216 , GLN A:217 , GLU A:218
BINDING SITE FOR RESIDUE IOD A 611
17
BC8
SOFTWARE
PRO A:424 , THR A:425
BINDING SITE FOR RESIDUE IOD A 612
18
BC9
SOFTWARE
PHE A:309 , ARG A:310
BINDING SITE FOR RESIDUE IOD A 613
19
CC1
SOFTWARE
GLU A:363 , ARG A:397
BINDING SITE FOR RESIDUE IOD A 614
20
CC2
SOFTWARE
LYS A:462 , THR A:463 , HOH A:724
BINDING SITE FOR RESIDUE IOD A 615
21
CC3
SOFTWARE
SER A:359 , LYS A:402
BINDING SITE FOR RESIDUE F A 616
22
CC4
SOFTWARE
HIS A:377
BINDING SITE FOR RESIDUE F A 617
23
CC5
SOFTWARE
SER A:580
BINDING SITE FOR RESIDUE F A 618
24
CC6
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , PHE A:380 , LEU A:417 , LEU A:433 , ILE A:436 , ARG A:440 , OSM A:701
BINDING SITE FOR RESIDUE HEM A 619
25
CC7
SOFTWARE
HIS A:109 , ARG A:255 , GLU A:258 , HEM A:619
BINDING SITE FOR RESIDUE OSM A 701
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:12-594)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PERL_BUBBU
129-711
1
A:12-594
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
[
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (108 KB)
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