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2Z4O
Asym. Unit
Info
Asym.Unit (85 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
WILD TYPE HIV-1 PROTEASE WITH POTENT ANTIVIRAL INHIBITOR GRL-98065
Authors
:
Y. F. Wang, Y. Tie, P. I. Boross, J. Tozser, A. K. Ghosh, R. W. Harrison, I. T. Weber
Date
:
20 Jun 07 (Deposition) - 22 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hiv-1, Wild Type Protease, Protease Inhibitor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. F. Wang, Y. Tie, P. I. Boross, J. Tozser, A. K. Ghosh, R. W. Harrison, I. T. Weber
Potent New Antiviral Compound Shows Similar Inhibition And Structural Interactions With Drug Resistant Mutants And Wild Type Hiv-1 Protease.
J. Med. Chem. V. 50 4509 2007
(for further references see the
PDB file header
)
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]F... (065a)
2a: ACETATE ION (ACTa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: SODIUM ION (NAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
065
1
Ligand/Ion
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(2S,3R)-3-HYDROXY-4-(N-ISOBUTYLBENZO[D][1,3]DIOXOLE-5-SULFONAMIDO)-1-PHENYLBUTAN-2-YLCARBAMATE
2
ACT
1
Ligand/Ion
ACETATE ION
3
CL
2
Ligand/Ion
CHLORIDE ION
4
NA
1
Ligand/Ion
SODIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:60 , HOH A:510 , HOH A:515 , HOH A:522 , HOH A:530 , HOH A:532
BINDING SITE FOR RESIDUE NA A 500
2
AC2
SOFTWARE
THR A:74 , ASN A:88 , HOH A:566 , HOH A:595 , ARG B:141
BINDING SITE FOR RESIDUE CL A 502
3
AC3
SOFTWARE
PRO B:139 , GLY B:140 , ARG B:141 , TYR B:159 , ASP B:160 , HOH B:857 , HOH B:920
BINDING SITE FOR RESIDUE ACT B 802
4
AC4
SOFTWARE
LEU A:23 , ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , ASP A:30 , GLY A:48 , GLY A:49 , ILE A:50 , PRO A:81 , ILE A:84 , ARG B:108 , ASP B:125 , GLY B:127 , ALA B:128 , ASP B:129 , ASP B:130 , GLY B:148 , GLY B:149 , ILE B:150 , PRO B:181 , ILE B:184 , HOH B:811 , HOH B:820 , HOH B:907 , HOH B:921
BINDING SITE FOR RESIDUE 065 B 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ASP_PROT_RETROV (A:20-89,B:120-189)
2: ASP_PROTEASE (A:22-32,B:122-132)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_PROT_RETROV
PS50175
Aspartyl protease, retroviral-type family profile.
POL_HV1BR
520-589
2
A:20-89
B:120-189
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
POL_HV1BR
522-533
2
A:22-32
B:122-132
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2z4oa_ (A:)
1b: SCOP_d2z4ob_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Retroviral protease (retropepsin)
(591)
Protein domain
:
Human immunodeficiency virus type 1 protease
(514)
Human immunodeficiency virus type 1 [TaxId: 11676]
(424)
1a
d2z4oa_
A:
1b
d2z4ob_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2z4oA00 (A:1-99)
1b: CATH_2z4oB00 (B:101-199)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Human immunodeficiency virus 1. Organism_taxid: 11676.
(108)
1a
2z4oA00
A:1-99
1b
2z4oB00
B:101-199
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RVP_2z4oB01 (B:104-198)
1b: PFAM_RVP_2z4oB02 (B:104-198)
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Clans
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(
)
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(
)
Clan
:
Peptidase_AA
(368)
Family
:
RVP
(212)
Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) (HIV-1)
(55)
1a
RVP-2z4oB01
B:104-198
1b
RVP-2z4oB02
B:104-198
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Asymmetric Unit 1
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