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2Z3Q
Asym. Unit
Info
Asym.Unit (72 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE IL-15/IL-15RA COMPLEX
Authors
:
M. Chirifu, Y. Yamagata, S. J. Davis, S. Ikemizu
Date
:
05 Jun 07 (Deposition) - 04 Sep 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Protein-Protein Complex, Cytokine/Cytokine Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Chirifu, C. Hayashi, T. Nakamura, S. Toma, T. Shuto, H. Kai, Y. Yamagata, S. J. Davis, S. Ikemizu
Crystal Structure Of The Il-15-Il-15Ralpha Complex, A Cytokine-Receptor Unit Presented In Trans
Nat. Immunol. V. 8 1001 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SUSHI (B:1-65,D:1-65)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
I15RA_HUMAN
31-95
2
B:1-65
D:1-65
[
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Exons
(8, 16)
Info
All Exons
Exon 1.6a (A:-4-0 | C:-4-0)
Exon 1.8b (A:1-17 | C:1-17)
Exon 1.9 (A:18-32 | C:18-32)
Exon 1.10 (A:33-75 | C:33-78)
Exon 1.11c (A:81-114 | C:79-112)
Exon 2.2a (B:-2-0 | D:-3-0)
Exon 2.4 (B:1-65 | D:1-65)
Exon 2.5a (B:65-78 | D:65-73)
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All Exon Boundaries
01: Boundary 1.5c/1.6a
02: Boundary 1.6a/1.8b
03: Boundary 1.8b/1.9
04: Boundary 1.9/1.10
05: Boundary 1.10/1.11c
06: Boundary 1.11c/-
07: Boundary -/2.2a
08: Boundary 2.2a/2.4
09: Boundary 2.4/2.5a
10: Boundary 2.5a/2.6b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000320650
1a
ENSE00001517654
chr4:
142557752-142557901
150
IL15_HUMAN
-
0
0
-
-
1.2
ENST00000320650
2
ENSE00001191128
chr4:
142577339-142577460
122
IL15_HUMAN
-
0
0
-
-
1.5c
ENST00000320650
5c
ENSE00001342283
chr4:
142640519-142640629
111
IL15_HUMAN
1-4
4
0
-
-
1.6a
ENST00000320650
6a
ENSE00001081769
chr4:
142641622-142641719
98
IL15_HUMAN
5-37
33
2
A:-4-0
C:-4-0
5
5
1.8b
ENST00000320650
8b
ENSE00001081768
chr4:
142643077-142643161
85
IL15_HUMAN
37-65
29
2
A:1-17
C:1-17
17
17
1.9
ENST00000320650
9
ENSE00001081766
chr4:
142649093-142649137
45
IL15_HUMAN
66-80
15
2
A:18-32
C:18-32
15
15
1.10
ENST00000320650
10
ENSE00001081765
chr4:
142651000-142651137
138
IL15_HUMAN
81-126
46
2
A:33-75
C:33-78
43
46
1.11c
ENST00000320650
11c
ENSE00001911998
chr4:
142653891-142654588
698
IL15_HUMAN
127-162
36
2
A:81-114
C:79-112
34
34
2.2a
ENST00000379977
2a
ENSE00001951830
chr10:
6019553-6019368
186
I15RA_HUMAN
1-30
30
2
B:-2-0
D:-3-0
3
4
2.4
ENST00000379977
4
ENSE00001592177
chr10:
6008302-6008108
195
I15RA_HUMAN
30-95
66
2
B:1-65
D:1-65
65
65
2.5a
ENST00000379977
5a
ENSE00000915054
chr10:
6005804-6005706
99
I15RA_HUMAN
95-128
34
2
B:65-78
D:65-73
14
9
2.6b
ENST00000379977
6b
ENSE00001729946
chr10:
6002530-6002330
201
I15RA_HUMAN
128-195
68
0
-
-
2.7
ENST00000379977
7
ENSE00002165429
chr10:
6001749-6001717
33
I15RA_HUMAN
195-206
12
0
-
-
2.9
ENST00000379977
9
ENSE00000915051
chr10:
5998417-5998342
76
I15RA_HUMAN
206-231
26
0
-
-
2.10j
ENST00000379977
10j
ENSE00001000818
chr10:
5995169-5994334
836
I15RA_HUMAN
231-267
37
0
-
-
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2z3qa1 (A:1-114)
1b: SCOP_d2z3qc_ (C:)
2a: SCOP_d2z3qb1 (B:1-78)
2b: SCOP_d2z3qd_ (D:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
Interleukin-15 (IL-15)
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2z3qa1
A:1-114
1b
d2z3qc_
C:
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Interleukin-15 receptor subunit alpha
(5)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d2z3qb1
B:1-78
2b
d2z3qd_
D:
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CATH Domains
(0, 0)
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_IL15_2z3qC01 (C:1-112)
1b: PFAM_IL15_2z3qC02 (C:1-112)
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Clan
:
no clan defined [family: IL15]
(5)
Family
:
IL15
(5)
Homo sapiens (Human)
(4)
1a
IL15-2z3qC01
C:1-112
1b
IL15-2z3qC02
C:1-112
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