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2Z2C
Asym. Unit
Info
Asym.Unit (283 KB)
Biol.Unit 1 (274 KB)
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(1)
Title
:
MURA INHIBITED BY UNAG-CNICIN ADDUCT
Authors
:
A. Steinbach, T. Skarzynski, A. J. Scheidig, C. D. Klein
Date
:
17 May 07 (Deposition) - 20 May 08 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Peptidoglycan, Transferase, Udp-N-Acetylglucosamine, Cnicin, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Steinbach, T. Skarzynski, A. J. Scheidig, C. D. Klein
The Antibacterial Target Enzyme Mura Synthesizes Its Own Non-Covalent Suicide Inhibitor From The Natural Product Cnicin
To Be Published
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: BETA-L-ASPARTIC ACID (IASa)
1b: BETA-L-ASPARTIC ACID (IASb)
1c: BETA-L-ASPARTIC ACID (IASc)
1d: BETA-L-ASPARTIC ACID (IASd)
2a: (2S,3S)-2-((2S,3R,4S,5R)-5-ETHANAM... (UDCa)
2b: (2S,3S)-2-((2S,3R,4S,5R)-5-ETHANAM... (UDCb)
2c: (2S,3S)-2-((2S,3R,4S,5R)-5-ETHANAM... (UDCc)
2d: (2S,3S)-2-((2S,3R,4S,5R)-5-ETHANAM... (UDCd)
3a: URIDINE-5'-DIPHOSPHATE (UDPa)
3b: URIDINE-5'-DIPHOSPHATE (UDPb)
3c: URIDINE-5'-DIPHOSPHATE (UDPc)
3d: URIDINE-5'-DIPHOSPHATE (UDPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
IAS
4
Mod. Amino Acid
BETA-L-ASPARTIC ACID
2
UDC
4
Ligand/Ion
(2S,3S)-2-((2S,3R,4S,5R)-5-ETHANAMIDO-3-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-4-YLOXY)-3,4-DIHYDROXY-2-METHYLBUTANOIC ACID
3
UDP
4
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:120 , PRO A:121 , VAL A:122 , ASP A:123 , LEU A:124 , HIS A:125 , LYS A:160 , SER A:162 , VAL A:163 , GLY A:164 , VAL A:327 , PHE A:328 , UDC A:951 , HOH A:952 , HOH A:1017 , HOH A:1032 , HOH A:1048 , HOH A:1119 , HOH A:1148 , HOH A:1163
BINDING SITE FOR RESIDUE UDP A 950
2
AC2
SOFTWARE
LYS A:22 , ASN A:23 , TRP A:95 , ARG A:120 , VAL A:163 , THR A:304 , ASP A:305 , PHE A:328 , ARG A:331 , LEU A:370 , ARG A:371 , UDP A:950 , HOH A:970 , HOH A:972 , HOH A:992 , HOH A:1008 , HOH A:1128 , HOH A:1150
BINDING SITE FOR RESIDUE UDC A 951
3
AC3
SOFTWARE
ARG B:120 , PRO B:121 , VAL B:122 , ASP B:123 , LEU B:124 , HIS B:125 , LYS B:160 , SER B:162 , VAL B:163 , GLY B:164 , VAL B:327 , UDC B:961 , HOH B:970 , HOH B:980 , HOH B:1045 , HOH B:1047 , HOH B:1156 , HOH B:1192
BINDING SITE FOR RESIDUE UDP B 960
4
AC4
SOFTWARE
LYS B:22 , ASN B:23 , TRP B:95 , ARG B:120 , VAL B:163 , THR B:304 , ASP B:305 , PHE B:328 , ARG B:331 , LEU B:370 , ARG B:371 , UDP B:960 , HOH B:974 , HOH B:991 , HOH B:1008 , HOH B:1118 , HOH B:1170 , HOH B:1180 , HOH B:1184
BINDING SITE FOR RESIDUE UDC B 961
5
AC5
SOFTWARE
ARG C:120 , PRO C:121 , VAL C:122 , ASP C:123 , LEU C:124 , HIS C:125 , LYS C:160 , SER C:162 , VAL C:163 , GLY C:164 , VAL C:327 , PHE C:328 , UDC C:971 , HOH C:984 , HOH C:991 , HOH C:1008 , HOH C:1037 , HOH C:1066 , HOH C:1203 , HOH C:1206
BINDING SITE FOR RESIDUE UDP C 970
6
AC6
SOFTWARE
LYS C:22 , ASN C:23 , TRP C:95 , ARG C:120 , VAL C:163 , THR C:304 , ASP C:305 , PHE C:328 , ARG C:331 , LEU C:370 , ARG C:371 , ARG C:397 , UDP C:970 , HOH C:990 , HOH C:1003 , HOH C:1052 , HOH C:1074 , HOH C:1102 , HOH C:1209
BINDING SITE FOR RESIDUE UDC C 971
7
AC7
SOFTWARE
ARG D:120 , PRO D:121 , VAL D:122 , ASP D:123 , LEU D:124 , HIS D:125 , LYS D:160 , SER D:162 , VAL D:163 , GLY D:164 , VAL D:327 , UDC D:981 , HOH D:985 , HOH D:990 , HOH D:1026 , HOH D:1028 , HOH D:1125 , HOH D:1184
BINDING SITE FOR RESIDUE UDP D 980
8
AC8
SOFTWARE
LYS D:22 , ASN D:23 , TRP D:95 , ARG D:120 , VAL D:163 , THR D:304 , ASP D:305 , PHE D:328 , ARG D:331 , LEU D:370 , ARG D:371 , ARG D:397 , UDP D:980 , HOH D:991 , HOH D:1018 , HOH D:1137 , HOH D:1161 , HOH D:1164 , HOH D:1166
BINDING SITE FOR RESIDUE UDC D 981
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2z2ca_ (A:)
1b: SCOP_d2z2cb_ (B:)
1c: SCOP_d2z2cc_ (C:)
1d: SCOP_d2z2cd_ (D:)
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Protein Domains
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
Enolpyruvate transferase, EPT
(68)
Protein domain
:
UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ)
(27)
Escherichia coli [TaxId: 562]
(3)
1a
d2z2ca_
A:
1b
d2z2cb_
B:
1c
d2z2cc_
C:
1d
d2z2cd_
D:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2z2cA01 (A:1-18,A:230-418)
1b: CATH_2z2cB01 (B:1-18,B:230-418)
1c: CATH_2z2cC01 (C:1-18,C:230-418)
1d: CATH_2z2cD01 (D:1-18,D:230-418)
1e: CATH_2z2cA02 (A:21-228)
1f: CATH_2z2cB02 (B:21-228)
1g: CATH_2z2cC02 (C:21-228)
1h: CATH_2z2cD02 (D:21-228)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-beta prism
(50)
Topology
:
UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain
(50)
Homologous Superfamily
:
[code=3.65.10.10, no name defined]
(47)
Escherichia coli. Organism_taxid: 562. Strain: k12.
(1)
1a
2z2cA01
A:1-18,A:230-418
1b
2z2cB01
B:1-18,B:230-418
1c
2z2cC01
C:1-18,C:230-418
1d
2z2cD01
D:1-18,D:230-418
1e
2z2cA02
A:21-228
1f
2z2cB02
B:21-228
1g
2z2cC02
C:21-228
1h
2z2cD02
D:21-228
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_EPSP_synthase_2z2cD01 (D:6-406)
1b: PFAM_EPSP_synthase_2z2cD02 (D:6-406)
1c: PFAM_EPSP_synthase_2z2cD03 (D:6-406)
1d: PFAM_EPSP_synthase_2z2cD04 (D:6-406)
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Clan
:
EPT_RTPC
(43)
Family
:
EPSP_synthase
(40)
Escherichia coli (strain K12)
(14)
1a
EPSP_synthase-2z2cD01
D:6-406
1b
EPSP_synthase-2z2cD02
D:6-406
1c
EPSP_synthase-2z2cD03
D:6-406
1d
EPSP_synthase-2z2cD04
D:6-406
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