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2YWB
Asym. Unit
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Asym.Unit (309 KB)
Biol.Unit 1 (156 KB)
Biol.Unit 2 (154 KB)
Biol.Unit 3 (304 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GMP SYNTHETASE FROM THERMUS THERMOPHILUS
Authors
:
S. Baba, M. Kanagawa, H. Yanai, T. Ishii, S. Kuramitsu, S. Yokoyama, G. S G. Kawai, Riken Structural Genomics/Proteomics Initiative (Rs
Date
:
20 Apr 07 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Gmp Synthetase, Xmp Binding, Atp Binding, Purine Nucleotide Biosynthetic Pathway, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Baba, M. Kanagawa, H. Yanai, T. Ishii, S. Kuramitsu, S. Yokoyama, G. Sampei, G. Kawai
Crystal Structure Of Gmp Synthetase From Thermus Thermophilus
To Be Published
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GMPS_ATP_PPASE (A:190-378,B:190-378,C:190-378,D:19...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GMPS_ATP_PPASE
PS51553
GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile.
GUAA_THET8
190-378
4
A:190-378
B:190-378
C:190-378
D:190-378
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2ywba3 (A:383-503)
1b: SCOP_d2ywbb3 (B:383-503)
1c: SCOP_d2ywbc3 (C:383-503)
1d: SCOP_d2ywbd3 (D:383-503)
2a: SCOP_d2ywba2 (A:190-382)
2b: SCOP_d2ywbb2 (B:190-382)
2c: SCOP_d2ywbc2 (C:190-382)
2d: SCOP_d2ywbd2 (D:190-382)
3a: SCOP_d2ywba1 (A:1-189)
3b: SCOP_d2ywbb1 (B:1-189)
3c: SCOP_d2ywbc1 (C:1-189)
3d: SCOP_d2ywbd1 (D:1-189)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Alpha-lytic protease prodomain-like
(115)
Superfamily
:
GMP synthetase C-terminal dimerisation domain
(6)
Family
:
GMP synthetase C-terminal dimerisation domain
(3)
Protein domain
:
GMP synthetase C-terminal dimerisation domain
(3)
Thermus thermophilus HB8 [TaxId: 300852]
(2)
1a
d2ywba3
A:383-503
1b
d2ywbb3
B:383-503
1c
d2ywbc3
C:383-503
1d
d2ywbd3
D:383-503
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
N-type ATP pyrophosphatases
(44)
Protein domain
:
GMP synthetase, central domain
(3)
Thermus thermophilus HB8 [TaxId: 300852]
(2)
2a
d2ywba2
A:190-382
2b
d2ywbb2
B:190-382
2c
d2ywbc2
C:190-382
2d
d2ywbd2
D:190-382
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Class I glutamine amidotransferases (GAT)
(48)
Protein domain
:
GMP synthetase
(3)
Thermus thermophilus HB8 [TaxId: 300852]
(2)
3a
d2ywba1
A:1-189
3b
d2ywbb1
B:1-189
3c
d2ywbc1
C:1-189
3d
d2ywbd1
D:1-189
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2ywbA03 (A:395-502)
1b: CATH_2ywbB03 (B:395-502)
1c: CATH_2ywbC03 (C:395-502)
1d: CATH_2ywbD03 (D:395-502)
2a: CATH_2ywbA01 (A:1-188)
2b: CATH_2ywbB01 (B:1-188)
2c: CATH_2ywbC01 (C:1-188)
2d: CATH_2ywbD01 (D:1-188)
3a: CATH_2ywbA02 (A:189-378)
3b: CATH_2ywbC02 (C:189-378)
3c: CATH_2ywbD02 (D:189-378)
3d: CATH_2ywbB02 (B:189-378)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GMP Synthetase; Chain A, domain 3
(192)
Homologous Superfamily
:
[code=3.30.300.10, no name defined]
(22)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(2)
1a
2ywbA03
A:395-502
1b
2ywbB03
B:395-502
1c
2ywbC03
C:395-502
1d
2ywbD03
D:395-502
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(3)
2a
2ywbA01
A:1-188
2b
2ywbB01
B:1-188
2c
2ywbC01
C:1-188
2d
2ywbD01
D:1-188
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(2)
3a
2ywbA02
A:189-378
3b
2ywbC02
C:189-378
3c
2ywbD02
D:189-378
3d
2ywbB02
B:189-378
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_GATase_2ywbD01 (D:3-184)
1b: PFAM_GATase_2ywbD02 (D:3-184)
1c: PFAM_GATase_2ywbD03 (D:3-184)
1d: PFAM_GATase_2ywbD04 (D:3-184)
2a: PFAM_GMP_synt_C_2ywbD05 (D:410-502)
2b: PFAM_GMP_synt_C_2ywbD06 (D:410-502)
2c: PFAM_GMP_synt_C_2ywbD07 (D:410-502)
2d: PFAM_GMP_synt_C_2ywbD08 (D:410-502)
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Clan
:
Glutaminase_I
(73)
Family
:
GATase
(26)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(6)
1a
GATase-2ywbD01
D:3-184
1b
GATase-2ywbD02
D:3-184
1c
GATase-2ywbD03
D:3-184
1d
GATase-2ywbD04
D:3-184
Clan
:
no clan defined [family: GMP_synt_C]
(3)
Family
:
GMP_synt_C
(3)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(2)
2a
GMP_synt_C-2ywbD05
D:410-502
2b
GMP_synt_C-2ywbD06
D:410-502
2c
GMP_synt_C-2ywbD07
D:410-502
2d
GMP_synt_C-2ywbD08
D:410-502
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Asym.Unit (309 KB)
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Header - Biol.Unit 1
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