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2YVX
Asym. Unit
Info
Asym.Unit (291 KB)
Biol.Unit 1 (144 KB)
Biol.Unit 2 (144 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MAGNESIUM TRANSPORTER MGTE
Authors
:
M. Hattori, Y. Tanaka, S. Fukai, R. Ishitani, O. Nureki
Date
:
18 Apr 07 (Deposition) - 04 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Membrane Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hattori, Y. Tanaka, S. Fukai, R. Ishitani, O. Nureki
Crystal Structure Of The Mgte Mg(2+) Transporter
Nature V. 448 1072 2007
[
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Hetero Components
(1, 18)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
18
Ligand/Ion
MAGNESIUM ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:432
BINDING SITE FOR RESIDUE MG B 451
02
AC2
SOFTWARE
ALA C:428 , ASP C:432
BINDING SITE FOR RESIDUE MG C 451
03
AC3
SOFTWARE
GLU A:216 , GLU A:258 , ASP A:259 , ASP A:418
BINDING SITE FOR RESIDUE MG A 451
04
AC4
SOFTWARE
GLU B:216 , GLU B:255 , GLU B:258 , ASP B:259 , ASP B:418
BINDING SITE FOR RESIDUE MG B 452
05
AC5
SOFTWARE
GLU C:216 , ASP C:259 , ASP C:418
BINDING SITE FOR RESIDUE MG C 452
06
AC6
SOFTWARE
ASP D:259 , ASP D:418
BINDING SITE FOR RESIDUE MG D 451
07
AC7
SOFTWARE
ASP A:91 , ASP A:92 , GLU A:166 , ASP A:247
BINDING SITE FOR RESIDUE MG A 452
08
AC8
SOFTWARE
ALA A:223 , ASP A:226
BINDING SITE FOR RESIDUE MG A 453
09
AC9
SOFTWARE
ASP B:91 , GLU B:166 , THR B:244 , ASP B:247
BINDING SITE FOR RESIDUE MG B 453
10
BC1
SOFTWARE
ASP A:246 , ASP A:250 , ALA B:223 , ASP B:226
BINDING SITE FOR RESIDUE MG B 454
11
BC2
SOFTWARE
ASP C:92 , ASP C:247
BINDING SITE FOR RESIDUE MG C 453
12
BC3
SOFTWARE
GLU D:166 , THR D:244 , ASP D:246 , ASP D:247
BINDING SITE FOR RESIDUE MG D 452
13
BC4
SOFTWARE
ASP C:246 , ASP C:250 , ALA D:223 , ASP D:226
BINDING SITE FOR RESIDUE MG D 453
14
BC5
SOFTWARE
ALA C:223 , ASP C:226 , ASP D:246 , ASP D:250
BINDING SITE FOR RESIDUE MG C 454
15
BC6
SOFTWARE
GLU A:255
BINDING SITE FOR RESIDUE MG A 454
16
BC7
SOFTWARE
ASP B:214 , GLU B:255
BINDING SITE FOR RESIDUE MG B 455
17
BC8
SOFTWARE
ASP C:214 , GLU C:216 , GLU C:255
BINDING SITE FOR RESIDUE MG C 455
18
BC9
SOFTWARE
GLU D:255 , GLU D:258
BINDING SITE FOR RESIDUE MG D 454
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: CBS (A:138-200,B:138-200,C:138-200,D:13...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBS
PS51371
CBS domain profile.
MGTE_THET8
138-200
202-258
8
A:138-200
B:138-200
C:138-200
D:138-200
A:202-258
B:202-258
C:202-258
D:202-258
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2yvxa1 (A:7-131)
1b: SCOP_d2yvxb1 (B:7-131)
1c: SCOP_d2yvxc1 (C:7-131)
1d: SCOP_d2yvxd1 (D:7-131)
2a: SCOP_d2yvxa2 (A:132-275)
2b: SCOP_d2yvxb2 (B:132-275)
2c: SCOP_d2yvxc2 (C:132-275)
2d: SCOP_d2yvxd2 (D:132-275)
3a: SCOP_d2yvxa3 (A:276-448)
3b: SCOP_d2yvxb3 (B:276-448)
3c: SCOP_d2yvxc3 (C:276-448)
3d: SCOP_d2yvxd3 (D:276-448)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
MgtE N-terminal domain-like
(4)
Family
:
MgtE N-terminal domain-like
(3)
Protein domain
:
Magnesium transporter MgtE
(3)
Thermus thermophilus [TaxId: 274]
(2)
1a
d2yvxa1
A:7-131
1b
d2yvxb1
B:7-131
1c
d2yvxc1
C:7-131
1d
d2yvxd1
D:7-131
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CBS-domain pair
(75)
Superfamily
:
CBS-domain pair
(75)
Family
:
CBS-domain pair
(50)
Protein domain
:
Magnesium transporter MgtE
(3)
Thermus thermophilus [TaxId: 274]
(2)
2a
d2yvxa2
A:132-275
2b
d2yvxb2
B:132-275
2c
d2yvxc2
C:132-275
2d
d2yvxd2
D:132-275
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
MgtE membrane domain-like
(2)
Superfamily
:
MgtE membrane domain-like
(2)
Family
:
MgtE membrane domain-like
(2)
Protein domain
:
Mg2+ transporter MgtE
(2)
Thermus thermophilus [TaxId: 274]
(2)
3a
d2yvxa3
A:276-448
3b
d2yvxb3
B:276-448
3c
d2yvxc3
C:276-448
3d
d2yvxd3
D:276-448
[
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]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2yvxA03 (A:276-448)
1b: CATH_2yvxB03 (B:276-448)
1c: CATH_2yvxC03 (C:276-448)
1d: CATH_2yvxD03 (D:276-448)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Tetracycline Repressor; domain 2
(126)
Homologous Superfamily
:
Magnesium transporter mgtE
(2)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(1)
1a
2yvxA03
A:276-448
1b
2yvxB03
B:276-448
1c
2yvxC03
C:276-448
1d
2yvxD03
D:276-448
[
close CATH info
]
Pfam Domains
(3, 16)
Info
all PFAM domains
1a: PFAM_MgtE_N_2yvxD01 (D:28-132)
1b: PFAM_MgtE_N_2yvxD02 (D:28-132)
1c: PFAM_MgtE_N_2yvxD03 (D:28-132)
1d: PFAM_MgtE_N_2yvxD04 (D:28-132)
2a: PFAM_CBS_2yvxD05 (D:198-254)
2b: PFAM_CBS_2yvxD06 (D:198-254)
2c: PFAM_CBS_2yvxD07 (D:198-254)
2d: PFAM_CBS_2yvxD08 (D:198-254)
2e: PFAM_CBS_2yvxD09 (D:198-254)
2f: PFAM_CBS_2yvxD10 (D:198-254)
2g: PFAM_CBS_2yvxD11 (D:198-254)
2h: PFAM_CBS_2yvxD12 (D:198-254)
3a: PFAM_MgtE_2yvxD13 (D:319-443)
3b: PFAM_MgtE_2yvxD14 (D:319-443)
3c: PFAM_MgtE_2yvxD15 (D:319-443)
3d: PFAM_MgtE_2yvxD16 (D:319-443)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
FliG
(8)
Family
:
MgtE_N
(6)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(4)
1a
MgtE_N-2yvxD01
D:28-132
1b
MgtE_N-2yvxD02
D:28-132
1c
MgtE_N-2yvxD03
D:28-132
1d
MgtE_N-2yvxD04
D:28-132
Clan
:
no clan defined [family: CBS]
(51)
Family
:
CBS
(51)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(4)
2a
CBS-2yvxD05
D:198-254
2b
CBS-2yvxD06
D:198-254
2c
CBS-2yvxD07
D:198-254
2d
CBS-2yvxD08
D:198-254
2e
CBS-2yvxD09
D:198-254
2f
CBS-2yvxD10
D:198-254
2g
CBS-2yvxD11
D:198-254
2h
CBS-2yvxD12
D:198-254
Clan
:
no clan defined [family: MgtE]
(2)
Family
:
MgtE
(2)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(2)
3a
MgtE-2yvxD13
D:319-443
3b
MgtE-2yvxD14
D:319-443
3c
MgtE-2yvxD15
D:319-443
3d
MgtE-2yvxD16
D:319-443
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Asym.Unit (291 KB)
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