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2YUU
Asym. Unit
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Asym.Unit (419 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FIRST PHORBOL ESTERS/DIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN KINASE C, DELTA
Authors
:
H. Abe, K. Miyamoto, N. Tochio, K. Saito, A. Sasagawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
06 Apr 07 (Deposition) - 08 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Metal Binding Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Abe, K. Miyamoto, N. Tochio, K. Saito, A. Sasagawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The First Phorbol Esters/Diacylglycerol Binding Domain Of Human Protein Kinase C, Delta
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:18 , GLU A:19 , PHE A:20
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:31 , CYS A:34
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ZF_DAG_PE_2 (A:17-67|-)
2: ZF_DAG_PE_1 (A:18-67|-)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_DAG_PE_2
PS50081
Zinc finger phorbol-ester/DAG-type profile.
KPCD_HUMAN
158-208
230-280
1
A:17-67
-
2
ZF_DAG_PE_1
PS00479
Zinc finger phorbol-ester/DAG-type signature.
KPCD_HUMAN
159-208
231-280
1
A:18-67
-
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Exons
(5, 5)
Info
All Exons
Exon 1.10 (A:1-39 (gaps))
Exon 1.11 (A:39-50)
Exon 1.12 (A:50-77)
Exon 1.15 (A:78-81)
Exon 1.16 (A:82-83)
View:
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All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12
4: Boundary 1.12/1.13
5: Boundary 1.14b/1.15
6: Boundary 1.15/1.16
7: Boundary 1.16/1.17
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000394729
3a
ENSE00001905376
chr3:
53195136-53195444
309
KPCD_HUMAN
-
0
0
-
-
1.7
ENST00000394729
7
ENSE00002149439
chr3:
53212420-53212553
134
KPCD_HUMAN
1-39
39
0
-
-
1.8b
ENST00000394729
8b
ENSE00001079750
chr3:
53213593-53213792
200
KPCD_HUMAN
39-105
67
0
-
-
1.9
ENST00000394729
9
ENSE00002189105
chr3:
53215223-53215283
61
KPCD_HUMAN
106-126
21
0
-
-
1.10
ENST00000394729
10
ENSE00001079749
chr3:
53215460-53215622
163
KPCD_HUMAN
126-180
55
1
A:1-39 (gaps)
52
1.11
ENST00000394729
11
ENSE00001079756
chr3:
53215717-53215748
32
KPCD_HUMAN
180-191
12
1
A:39-50
12
1.12
ENST00000394729
12
ENSE00001079752
chr3:
53217137-53217222
86
KPCD_HUMAN
191-219
29
1
A:50-77
28
1.13
ENST00000394729
13
ENSE00001079767
chr3:
53217468-53217597
130
KPCD_HUMAN
220-263
44
0
-
-
1.14b
ENST00000394729
14b
ENSE00001079762
chr3:
53218890-53218990
101
KPCD_HUMAN
263-296
34
0
-
-
1.15
ENST00000394729
15
ENSE00001079761
chr3:
53219620-53219716
97
KPCD_HUMAN
297-329
33
1
A:78-81
4
1.16
ENST00000394729
16
ENSE00001079755
chr3:
53219943-53220043
101
KPCD_HUMAN
329-362
34
1
A:82-83
2
1.17
ENST00000394729
17
ENSE00001079757
chr3:
53220183-53220356
174
KPCD_HUMAN
363-420
58
0
-
-
1.18
ENST00000394729
18
ENSE00001079751
chr3:
53220620-53220711
92
KPCD_HUMAN
421-451
31
0
-
-
1.19
ENST00000394729
19
ENSE00001079754
chr3:
53221356-53221418
63
KPCD_HUMAN
451-472
22
0
-
-
1.20
ENST00000394729
20
ENSE00001079760
chr3:
53222736-53222874
139
KPCD_HUMAN
472-518
47
0
-
-
1.21
ENST00000394729
21
ENSE00001079766
chr3:
53223074-53223262
189
KPCD_HUMAN
519-581
63
0
-
-
1.22
ENST00000394729
22
ENSE00001079764
chr3:
53223889-53224017
129
KPCD_HUMAN
582-624
43
0
-
-
1.23b
ENST00000394729
23b
ENSE00001321750
chr3:
53226124-53226733
610
KPCD_HUMAN
625-676
52
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2yuua_ (A:)
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Protein Domains
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(
)
Organisms
(
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(
)
Class
:
Small proteins
(3458)
Fold
:
Cysteine-rich domain
(24)
Superfamily
:
Cysteine-rich domain
(24)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2yuua_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_C1_1_2yuuA01 (A:18-70)
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)
(
)
Clan
:
C1
(13)
Family
:
C1_1
(10)
Homo sapiens (Human)
(4)
1a
C1_1-2yuuA01
A:18-70
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Chain A
Asymmetric Unit 1
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