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2YUD
Asym. Unit
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Asym.Unit (960 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE YTH DOMAIN IN YTH DOMAIN-CONTAINING PROTEIN 1 (PUTATIVE SPLICING FACTOR YT521)
Authors
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Tarada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
06 Apr 07 (Deposition) - 09 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Structure Genomics, Yth Domain, Yth Domain-Containing Protein 1 (Putative Splicing Factor Yt521), Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Tarada, S. Yokoyama
Solution Structure Of The Yth Domain In Yth Domain-Containing Protein 1 (Putative Splicing Factor Yt521)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: YTH (A:26-163)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
YTH
PS50882
YTH domain profile.
YTDC1_HUMAN
355-492
1
A:26-163
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Exons
(7, 7)
Info
All Exons
Exon 1.6 (A:1-4)
Exon 1.7 (A:5-14)
Exon 1.8 (A:14-45)
Exon 1.9 (A:46-82)
Exon 1.10a (A:82-121)
Exon 1.11 (A:121-149)
Exon 1.12a (A:150-180)
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10a
6: Boundary 1.10a/1.11
7: Boundary 1.11/1.12a
8: Boundary 1.12a/1.13
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000344157
1a
ENSE00001406123
chr4:
69215807-69215444
364
YTDC1_HUMAN
1-10
10
0
-
-
1.3b
ENST00000344157
3b
ENSE00001139471
chr4:
69204102-69204001
102
YTDC1_HUMAN
10-44
35
0
-
-
1.4c
ENST00000344157
4c
ENSE00001331970
chr4:
69203618-69203290
329
YTDC1_HUMAN
44-153
110
0
-
-
1.5
ENST00000344157
5
ENSE00000969898
chr4:
69203168-69202745
424
YTDC1_HUMAN
154-295
142
0
-
-
1.6
ENST00000344157
6
ENSE00001072477
chr4:
69199115-69199026
90
YTDC1_HUMAN
295-325
31
1
A:1-4
4
1.7
ENST00000344157
7
ENSE00001220825
chr4:
69198565-69198512
54
YTDC1_HUMAN
325-343
19
1
A:5-14
10
1.8
ENST00000344157
8
ENSE00001072483
chr4:
69197915-69197821
95
YTDC1_HUMAN
343-374
32
1
A:14-45
32
1.9
ENST00000344157
9
ENSE00001072479
chr4:
69196028-69195920
109
YTDC1_HUMAN
375-411
37
1
A:46-82
37
1.10a
ENST00000344157
10a
ENSE00001072476
chr4:
69195837-69195720
118
YTDC1_HUMAN
411-450
40
1
A:82-121
40
1.11
ENST00000344157
11
ENSE00001012578
chr4:
69189941-69189857
85
YTDC1_HUMAN
450-478
29
1
A:121-149
29
1.12a
ENST00000344157
12a
ENSE00001012580
chr4:
69188633-69188467
167
YTDC1_HUMAN
479-534
56
1
A:150-180
31
1.13
ENST00000344157
13
ENSE00001072482
chr4:
69185923-69185841
83
YTDC1_HUMAN
534-562
29
0
-
-
1.14
ENST00000344157
14
ENSE00001012548
chr4:
69184580-69184544
37
YTDC1_HUMAN
562-574
13
0
-
-
1.15a
ENST00000344157
15a
ENSE00001072474
chr4:
69184447-69184408
40
YTDC1_HUMAN
574-587
14
0
-
-
1.16
ENST00000344157
16
ENSE00001072480
chr4:
69184299-69184237
63
YTDC1_HUMAN
588-608
21
0
-
-
1.17a
ENST00000344157
17a
ENSE00001012568
chr4:
69182166-69182032
135
YTDC1_HUMAN
609-653
45
0
-
-
1.18b
ENST00000344157
18b
ENSE00001524098
chr4:
69180041-69176105
3937
YTDC1_HUMAN
654-727
74
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_YTH_2yudA01 (A:25-166)
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Clan
:
PUA
(42)
Family
:
YTH
(2)
Homo sapiens (Human)
(2)
1a
YTH-2yudA01
A:25-166
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Asymmetric Unit 1
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