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2YU6
Asym. Unit
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Asym.Unit (754 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE YTH DOMAIN IN YTH DOMAIN-CONTAINING PROTEIN 2
Authors
:
R. Endo, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Tarada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
05 Apr 07 (Deposition) - 09 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Yth Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Endo, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Tarada, S. Yokoyama
Solution Structure Of The Yth Domain In Yth Domain-Containing Protein 2
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_058003 (Q129Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_058003
L
1409
Q
YTDC2_HUMAN
Polymorphism
1132528
A
Q
129
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: YTH (A:8-138)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
YTH
PS50882
YTH domain profile.
YTDC2_HUMAN
1288-1418
1
A:8-138
[
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Exons
(4, 4)
Info
All Exons
Exon 1.27c (A:1-7)
Exon 1.28a (A:8-63)
Exon 1.29a (A:64-124)
Exon 1.29d (A:125-141)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.27b/1.27c
2: Boundary 1.27c/1.28a
3: Boundary 1.28a/1.29a
4: Boundary 1.29a/1.29d
5: Boundary 1.29d/1.29f
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000161863
1a
ENSE00002083751
chr5:
112849380-112849779
400
YTDC2_HUMAN
1-63
63
0
-
-
1.3
ENST00000161863
3
ENSE00001180477
chr5:
112850969-112851059
91
YTDC2_HUMAN
63-93
31
0
-
-
1.5
ENST00000161863
5
ENSE00001180473
chr5:
112860678-112860874
197
YTDC2_HUMAN
93-159
67
0
-
-
1.6b
ENST00000161863
6b
ENSE00001306353
chr5:
112862283-112862482
200
YTDC2_HUMAN
159-225
67
0
-
-
1.7
ENST00000161863
7
ENSE00001260818
chr5:
112868576-112868742
167
YTDC2_HUMAN
226-281
56
0
-
-
1.8
ENST00000161863
8
ENSE00001260806
chr5:
112870002-112870104
103
YTDC2_HUMAN
281-315
35
0
-
-
1.9
ENST00000161863
9
ENSE00001260796
chr5:
112871339-112871495
157
YTDC2_HUMAN
316-368
53
0
-
-
1.10
ENST00000161863
10
ENSE00001375927
chr5:
112874771-112874878
108
YTDC2_HUMAN
368-404
37
0
-
-
1.11
ENST00000161863
11
ENSE00001389542
chr5:
112876665-112876813
149
YTDC2_HUMAN
404-453
50
0
-
-
1.12
ENST00000161863
12
ENSE00001364452
chr5:
112878065-112878200
136
YTDC2_HUMAN
454-499
46
0
-
-
1.13
ENST00000161863
13
ENSE00001363942
chr5:
112884238-112884364
127
YTDC2_HUMAN
499-541
43
0
-
-
1.14
ENST00000161863
14
ENSE00001371690
chr5:
112884652-112884717
66
YTDC2_HUMAN
541-563
23
0
-
-
1.15
ENST00000161863
15
ENSE00001383801
chr5:
112888878-112889056
179
YTDC2_HUMAN
563-623
61
0
-
-
1.16
ENST00000161863
16
ENSE00001082549
chr5:
112889287-112889383
97
YTDC2_HUMAN
623-655
33
0
-
-
1.17
ENST00000161863
17
ENSE00001082542
chr5:
112889464-112889551
88
YTDC2_HUMAN
655-684
30
0
-
-
1.18
ENST00000161863
18
ENSE00001082539
chr5:
112889639-112889719
81
YTDC2_HUMAN
685-711
27
0
-
-
1.19a
ENST00000161863
19a
ENSE00001343036
chr5:
112891749-112891831
83
YTDC2_HUMAN
712-739
28
0
-
-
1.20a
ENST00000161863
20a
ENSE00001326602
chr5:
112896777-112896882
106
YTDC2_HUMAN
739-774
36
0
-
-
1.21
ENST00000161863
21
ENSE00000760310
chr5:
112899070-112899189
120
YTDC2_HUMAN
775-814
40
0
-
-
1.22
ENST00000161863
22
ENSE00000588976
chr5:
112899556-112899828
273
YTDC2_HUMAN
815-905
91
0
-
-
1.23b
ENST00000161863
23b
ENSE00000760317
chr5:
112901590-112901716
127
YTDC2_HUMAN
906-948
43
0
-
-
1.24
ENST00000161863
24
ENSE00000760318
chr5:
112902789-112902994
206
YTDC2_HUMAN
948-1016
69
0
-
-
1.25
ENST00000161863
25
ENSE00000760319
chr5:
112903351-112903546
196
YTDC2_HUMAN
1017-1082
66
0
-
-
1.26b
ENST00000161863
26b
ENSE00000760320
chr5:
112915283-112915392
110
YTDC2_HUMAN
1082-1118
37
0
-
-
1.27b
ENST00000161863
27b
ENSE00000364322
chr5:
112917114-112917406
293
YTDC2_HUMAN
1119-1216
98
0
-
-
1.27c
ENST00000161863
27c
ENSE00000760321
chr5:
112919999-112920176
178
YTDC2_HUMAN
1216-1275
60
1
A:1-7
7
1.28a
ENST00000161863
28a
ENSE00000760322
chr5:
112926738-112926941
204
YTDC2_HUMAN
1276-1343
68
1
A:8-63
56
1.29a
ENST00000161863
29a
ENSE00000760323
chr5:
112927693-112927875
183
YTDC2_HUMAN
1344-1404
61
1
A:64-124
61
1.29d
ENST00000161863
29d
ENSE00000890208
chr5:
112929000-112929087
88
YTDC2_HUMAN
1405-1430
26
1
A:125-141
17
1.29f
ENST00000161863
29f
ENSE00000890209
chr5:
112929179-112930981
1803
YTDC2_HUMAN
-
0
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_YTH_2yu6A01 (A:8-141)
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Clans
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)
(
)
Clan
:
PUA
(42)
Family
:
YTH
(2)
Homo sapiens (Human)
(2)
1a
YTH-2yu6A01
A:8-141
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Chain A
Asymmetric Unit 1
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