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Asym. Unit
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Asym.Unit (616 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE PDZ-DOMAIN OF HUMAN PROTEASE HTRA 1 PRECURSOR
Authors
:
A. K. Goroncy, K. Saito, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
05 Apr 07 (Deposition) - 08 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Protein Regulation, Igf-Binding Protein Cleavage, Peptidase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Goroncy, K. Saito, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama
Solution Structure Of The Pdz-Domain Of Human Protease Htra 1 Precursor
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_076382 (D88H, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076382
D
450
H
HTRA1_HUMAN
Unclassified (CADASIL2)
772225907
A
D
88
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:5-92)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
HTRA1_HUMAN
365-454
1
A:5-92
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Exons
(5, 5)
Info
All Exons
Exon 1.5 (A:1-4)
Exon 1.6 (A:5-12)
Exon 1.7 (A:12-31)
Exon 1.8 (A:31-63)
Exon 1.9b (A:63-118)
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1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9b
6: Boundary 1.9b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000368984
1a
ENSE00001448527
chr10:
124221041-124221640
600
HTRA1_HUMAN
1-158
158
0
-
-
1.2
ENST00000368984
2
ENSE00001727698
chr10:
124248418-124248517
100
HTRA1_HUMAN
158-191
34
0
-
-
1.3
ENST00000368984
3
ENSE00001656483
chr10:
124248938-124249142
205
HTRA1_HUMAN
191-259
69
0
-
-
1.4
ENST00000368984
4
ENSE00001691312
chr10:
124266207-124266401
195
HTRA1_HUMAN
260-324
65
0
-
-
1.5
ENST00000368984
5
ENSE00001099158
chr10:
124266886-124266918
33
HTRA1_HUMAN
325-335
11
1
A:1-4
4
1.6
ENST00000368984
6
ENSE00001099160
chr10:
124268172-124268286
115
HTRA1_HUMAN
336-374
39
1
A:5-12
8
1.7
ENST00000368984
7
ENSE00001099153
chr10:
124269612-124269669
58
HTRA1_HUMAN
374-393
20
1
A:12-31
20
1.8
ENST00000368984
8
ENSE00001099157
chr10:
124271486-124271581
96
HTRA1_HUMAN
393-425
33
1
A:31-63
33
1.9b
ENST00000368984
9b
ENSE00001608082
chr10:
124273707-124274424
718
HTRA1_HUMAN
425-480
56
1
A:63-118
56
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PDZ_2ytwA01 (A:13-101)
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Clans
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Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-2ytwA01
A:13-101
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Chain A
Asymmetric Unit 1
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