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2YT4
Asym. Unit
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Asym.Unit (37 KB)
Biol.Unit 1 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN DGCR8 CORE
Authors
:
Y. Cho, S. Y. Sohn
Date
:
05 Apr 07 (Deposition) - 21 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Dsrbd, Rna Binding Domain, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Y. Sohn, W. J. Bae, J. J. Kim, K. H. Yeom, V. N. Kim, Y. Cho
Crystal Structure Of Human Dgcr8 Core
Nat. Struct. Mol. Biol. V. 14 847 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DS_RBD (A:511-578)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DS_RBD
PS50137
Double stranded RNA-binding domain (dsRBD) profile.
DGCR8_HUMAN
511-578
1
A:511-578
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Exons
(7, 7)
Info
All Exons
Exon 1.5 (A:489-502 (gaps))
Exon 1.6 (A:502-536)
Exon 1.7 (A:536-569)
Exon 1.8b (A:569-596 (gaps))
Exon 1.9a (A:597-630)
Exon 1.10c (A:630-666 (gaps))
Exon 1.11a (A:666-701)
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All Exon Boundaries
1: Boundary 1.4c/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8b
5: Boundary 1.8b/1.9a
6: Boundary 1.9a/1.10c
7: Boundary 1.10c/1.11a
8: Boundary 1.11a/1.11d
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000351989
1a
ENSE00001833496
chr22:
20067755-20067906
152
DGCR8_HUMAN
-
0
0
-
-
1.3b
ENST00000351989
3b
ENSE00001192072
chr22:
20073210-20074206
997
DGCR8_HUMAN
1-240
240
0
-
-
1.3f
ENST00000351989
3f
ENSE00001056489
chr22:
20074685-20074844
160
DGCR8_HUMAN
241-294
54
0
-
-
1.4a
ENST00000351989
4a
ENSE00000879206
chr22:
20077192-20077334
143
DGCR8_HUMAN
294-341
48
0
-
-
1.4c
ENST00000351989
4c
ENSE00000650862
chr22:
20077499-20077781
283
DGCR8_HUMAN
342-436
95
0
-
-
1.5
ENST00000351989
5
ENSE00000650863
chr22:
20078958-20079155
198
DGCR8_HUMAN
436-502
67
1
A:489-502 (gaps)
26
1.6
ENST00000351989
6
ENSE00000650864
chr22:
20079392-20079493
102
DGCR8_HUMAN
502-536
35
1
A:502-536
35
1.7
ENST00000351989
7
ENSE00000650865
chr22:
20080332-20080430
99
DGCR8_HUMAN
536-569
34
1
A:536-569
34
1.8b
ENST00000351989
8b
ENSE00000650866
chr22:
20082236-20082318
83
DGCR8_HUMAN
569-596
28
1
A:569-596 (gaps)
28
1.9a
ENST00000351989
9a
ENSE00000650867
chr22:
20093700-20093800
101
DGCR8_HUMAN
597-630
34
1
A:597-630
34
1.10c
ENST00000351989
10c
ENSE00000650868
chr22:
20094115-20094221
107
DGCR8_HUMAN
630-666
37
1
A:630-666 (gaps)
37
1.11a
ENST00000351989
11a
ENSE00000650869
chr22:
20094794-20094921
128
DGCR8_HUMAN
666-708
43
1
A:666-701
36
1.11d
ENST00000351989
11d
ENSE00000879207
chr22:
20096413-20096526
114
DGCR8_HUMAN
709-746
38
0
-
-
1.12c
ENST00000351989
12c
ENSE00001896271
chr22:
20097548-20099394
1847
DGCR8_HUMAN
747-773
27
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_dsrm_2yt4A01 (A:620-684)
1b: PFAM_dsrm_2yt4A02 (A:620-684)
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)
(
)
Clan
:
DSRM
(45)
Family
:
dsrm
(27)
Homo sapiens (Human)
(7)
1a
dsrm-2yt4A01
A:620-684
1b
dsrm-2yt4A02
A:620-684
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Asymmetric Unit 1
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Asym.Unit (37 KB)
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