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2YSG
Asym. Unit
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Asym.Unit (200 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE WW DOMAIN FROM THE HUMAN SYNTAXIN-BINDING PROTEIN 4
Authors
:
S. Ohnishi, N. Tochio, M. Sato, S. Koshiba, T. Harada, S. Watanabe, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
03 Apr 07 (Deposition) - 09 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Synip, Stxbp4, Ww Domain, Nmr, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ohnishi, N. Tochio, M. Sato, S. Koshiba, T. Harada, S. Watanabe, T. Kigawa, S. Yokoyama
Solution Structure Of The Ww Domain From The Human Syntaxin-Binding Protein 4
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: WW_DOMAIN_2 (A:8-39)
2: WW_DOMAIN_1 (A:12-37)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WW_DOMAIN_2
PS50020
WW/rsp5/WWP domain profile.
STXB4_HUMAN
496-529
1
A:8-39
2
WW_DOMAIN_1
PS01159
WW/rsp5/WWP domain signature.
STXB4_HUMAN
502-527
1
A:12-37
[
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Exons
(4, 4)
Info
All Exons
Exon 1.17 (A:1-3)
Exon 1.18 (A:4-7)
Exon 1.19 (A:8-26)
Exon 1.20b (A:26-40)
View:
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All Exon Boundaries
1: Boundary 1.16/1.17
2: Boundary 1.17/1.18
3: Boundary 1.18/1.19
4: Boundary 1.19/1.20b
5: Boundary 1.20b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000376352
1b
ENSE00001470286
chr17:
53046126-53046176
51
STXB4_HUMAN
-
0
0
-
-
1.2
ENST00000376352
2
ENSE00001334539
chr17:
53062975-53063052
78
STXB4_HUMAN
-
0
0
-
-
1.3
ENST00000376352
3
ENSE00002185733
chr17:
53063503-53063627
125
STXB4_HUMAN
1-16
16
0
-
-
1.4a
ENST00000376352
4a
ENSE00001774800
chr17:
53068186-53068318
133
STXB4_HUMAN
16-60
45
0
-
-
1.6
ENST00000376352
6
ENSE00001717099
chr17:
53076706-53076812
107
STXB4_HUMAN
61-96
36
0
-
-
1.7b
ENST00000376352
7b
ENSE00001470279
chr17:
53076993-53077203
211
STXB4_HUMAN
96-166
71
0
-
-
1.8
ENST00000376352
8
ENSE00001273502
chr17:
53078169-53078244
76
STXB4_HUMAN
167-192
26
0
-
-
1.9
ENST00000376352
9
ENSE00001101541
chr17:
53084867-53084958
92
STXB4_HUMAN
192-222
31
0
-
-
1.10b
ENST00000376352
10b
ENSE00001101524
chr17:
53108529-53108625
97
STXB4_HUMAN
223-255
33
0
-
-
1.11
ENST00000376352
11
ENSE00001101564
chr17:
53111529-53111620
92
STXB4_HUMAN
255-285
31
0
-
-
1.12a
ENST00000376352
12a
ENSE00001101552
chr17:
53120597-53120686
90
STXB4_HUMAN
286-315
30
0
-
-
1.14
ENST00000376352
14
ENSE00001470271
chr17:
53124450-53124515
66
STXB4_HUMAN
316-337
22
0
-
-
1.15
ENST00000376352
15
ENSE00001470270
chr17:
53150261-53150437
177
STXB4_HUMAN
338-396
59
0
-
-
1.16
ENST00000376352
16
ENSE00001470268
chr17:
53155439-53155555
117
STXB4_HUMAN
397-435
39
0
-
-
1.17
ENST00000376352
17
ENSE00001470267
chr17:
53156047-53156096
50
STXB4_HUMAN
436-452
17
1
A:1-3
3
1.18
ENST00000376352
18
ENSE00001470265
chr17:
53158411-53158544
134
STXB4_HUMAN
452-497
46
1
A:4-7
4
1.19
ENST00000376352
19
ENSE00001470263
chr17:
53218671-53218728
58
STXB4_HUMAN
497-516
20
1
A:8-26
19
1.20b
ENST00000376352
20b
ENSE00001823147
chr17:
53237158-53241646
4489
STXB4_HUMAN
516-553
38
1
A:26-40
15
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d2ysga_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
WW domain-like
(101)
Superfamily
:
WW domain
(80)
Family
:
WW domain
(69)
Protein domain
:
automated matches
(10)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2ysga_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2ysgA01 (A:8-40)
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Class
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Mainly Beta
(13760)
Architecture
:
Single Sheet
(341)
Topology
:
Ubiquitin Ligase Nedd4; Chain: W;
(40)
Homologous Superfamily
:
[code=2.20.70.10, no name defined]
(40)
Human (Homo sapiens)
(27)
1a
2ysgA01
A:8-40
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_WW_2ysgA01 (A:8-37)
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Clan
:
no clan defined [family: WW]
(77)
Family
:
WW
(77)
Homo sapiens (Human)
(62)
1a
WW-2ysgA01
A:8-37
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