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Asym. Unit
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Asym.Unit (276 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE ZINC FINGER CCHC DOMAIN FROM THE HUMAN RETINOBLASTOMA-BINDING PROTEIN 6 (RETINOBLASTOMA-BINDING Q PROTEIN 1, RBQ-1)
Authors
:
S. Ohnishi, M. Sato, N. Tochio, S. Koshiba, T. Harada, S. Watanabe, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
03 Apr 07 (Deposition) - 09 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Zinc Finger, Cchc, Nmr, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ohnishi, M. Sato, N. Tochio, S. Koshiba, T. Harada, S. Watanabe, T. Kigawa, S. Yokoyama
Solution Structure Of The Zinc Finger Cchc Domain From The Human Retinoblastoma-Binding Protein 6 (Retinoblastoma-Binding Q Protein 1, Rbq-1)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:10 , CYS A:13 , HIS A:18 , CYS A:23
BINDING SITE FOR RESIDUE ZN A 181
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZF_CCHC (A:10-24)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_CCHC
PS50158
Zinc finger CCHC-type profile.
RBBP6_HUMAN
161-175
1
A:10-24
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Exons
(4, 4)
Info
All Exons
Exon 1.4 (A:1-5)
Exon 1.5 (A:6-7)
Exon 1.6 (A:8-27)
Exon 1.7 (A:28-55)
View:
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All Exon Boundaries
1: Boundary 1.3a/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000319715
1b
ENSE00001944481
chr16:
24551516-24552113
598
RBBP6_HUMAN
1-56
56
0
-
-
1.2
ENST00000319715
2
ENSE00001732323
chr16:
24557484-24557583
100
RBBP6_HUMAN
56-89
34
0
-
-
1.3a
ENST00000319715
3a
ENSE00001690982
chr16:
24560266-24560302
37
RBBP6_HUMAN
89-101
13
0
-
-
1.4
ENST00000319715
4
ENSE00001733675
chr16:
24564834-24564878
45
RBBP6_HUMAN
102-116
15
1
A:1-5
5
1.5
ENST00000319715
5
ENSE00001654475
chr16:
24566936-24567024
89
RBBP6_HUMAN
117-146
30
1
A:6-7
2
1.6
ENST00000319715
6
ENSE00001627030
chr16:
24567142-24567238
97
RBBP6_HUMAN
146-178
33
1
A:8-27
20
1.7
ENST00000319715
7
ENSE00001655617
chr16:
24567629-24567768
140
RBBP6_HUMAN
179-225
47
1
A:28-55
28
1.8
ENST00000319715
8
ENSE00001593165
chr16:
24570826-24570998
173
RBBP6_HUMAN
225-283
59
0
-
-
1.9
ENST00000319715
9
ENSE00001650552
chr16:
24572933-24573036
104
RBBP6_HUMAN
283-317
35
0
-
-
1.10
ENST00000319715
10
ENSE00001676101
chr16:
24573145-24573482
338
RBBP6_HUMAN
318-430
113
0
-
-
1.11
ENST00000319715
11
ENSE00001646664
chr16:
24574520-24574616
97
RBBP6_HUMAN
430-462
33
0
-
-
1.12
ENST00000319715
12
ENSE00001712710
chr16:
24574744-24574822
79
RBBP6_HUMAN
463-489
27
0
-
-
1.13
ENST00000319715
13
ENSE00001694672
chr16:
24574931-24574985
55
RBBP6_HUMAN
489-507
19
0
-
-
1.14
ENST00000319715
14
ENSE00001776080
chr16:
24576118-24576186
69
RBBP6_HUMAN
507-530
24
0
-
-
1.15
ENST00000319715
15
ENSE00001738863
chr16:
24578464-24578826
363
RBBP6_HUMAN
530-651
122
0
-
-
1.16
ENST00000319715
16
ENSE00001745967
chr16:
24579113-24579214
102
RBBP6_HUMAN
651-685
35
0
-
-
1.17
ENST00000319715
17
ENSE00001175524
chr16:
24580066-24581820
1755
RBBP6_HUMAN
685-1270
586
0
-
-
1.18b
ENST00000319715
18b
ENSE00001856595
chr16:
24582197-24584184
1988
RBBP6_HUMAN
1270-1792
523
0
-
-
[
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_zf_CCHC_2ysaA01 (A:9-25)
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Clan
:
Retroviral_zf
(10)
Family
:
zf-CCHC
(10)
Homo sapiens (Human)
(1)
1a
zf-CCHC-2ysaA01
A:9-25
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