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2YS7
Asym. Unit
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Asym.Unit (71 KB)
Biol.Unit 1 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
Authors
:
S. Baba, M. Kanagawa, S. Kuramitsu, S. Yokoyama, G. Kawai, G. Sampei, Ri Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
03 Apr 07 (Deposition) - 09 Oct 07 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.21
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycinamide Ribonucleotide Synthetase, Gar Synthetase, Atp Binding, Purine Nucleotide Biosynthetic Pathway, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. Sampei, S. Baba, M. Kanagawa, H. Yanai, T. Ishii, H. Kawai, Y. Fukai, A. Ebihara, N. Nakagawa, G. Kawai
Crystal Structures Of Glycinamide Ribonucleotide Synthetase Purd, From Thermophilic Eubacteria
J. Biochem. V. 148 429 2010
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2ys7a3 (A:323-418)
2a: SCOP_d2ys7a2 (A:102-322)
3a: SCOP_d2ys7a1 (A:-1-101)
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Protein Domains
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Organisms
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)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Geobacillus kaustophilus [TaxId: 1462]
(4)
1a
d2ys7a3
A:323-418
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
automated matches
(42)
Protein domain
:
automated matches
(42)
Geobacillus kaustophilus [TaxId: 1462]
(4)
2a
d2ys7a2
A:102-322
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
automated matches
(45)
Protein domain
:
automated matches
(45)
Geobacillus kaustophilus [TaxId: 1462]
(4)
3a
d2ys7a1
A:-1-101
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_2ys7A03 (A:189-324)
2a: CATH_2ys7A02 (A:119-188)
3a: CATH_2ys7A01 (A:2-93)
4a: CATH_2ys7A04 (A:325-418)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Geobacillus kaustophilus. Organism_taxid: 1462.
(5)
1a
2ys7A03
A:189-324
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Geobacillus kaustophilus. Organism_taxid: 1462.
(4)
2a
2ys7A02
A:119-188
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Geobacillus kaustophilus. Organism_taxid: 1462.
(4)
3a
2ys7A01
A:2-93
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Glycinamide Ribonucleotide Synthetase; Chain A, domain 4
(10)
Homologous Superfamily
:
Glycinamide Ribonucleotide Synthetase; Chain A, domain 4
(10)
Geobacillus kaustophilus. Organism_taxid: 1462.
(4)
4a
2ys7A04
A:325-418
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_GARS_A_2ys7A01 (A:101-293)
2a: PFAM_GARS_C_2ys7A02 (A:325-417)
3a: PFAM_GARS_N_2ys7A03 (A:1-100)
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Clans
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)
Clan
:
ATP-grasp
(83)
Family
:
GARS_A
(12)
Geobacillus kaustophilus
(4)
1a
GARS_A-2ys7A01
A:101-293
Clan
:
no clan defined [family: GARS_C]
(12)
Family
:
GARS_C
(12)
Geobacillus kaustophilus
(4)
2a
GARS_C-2ys7A02
A:325-417
Clan
:
no clan defined [family: GARS_N]
(12)
Family
:
GARS_N
(12)
Geobacillus kaustophilus
(4)
3a
GARS_N-2ys7A03
A:1-100
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Asymmetric Unit 1
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