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Asym. Unit
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Asym.Unit (256 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE SOMATOMEDIN B DOMAIN OF HUMAN ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER
Authors
:
H. Abe, A. Sasagawa, N. Tochio, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
03 Apr 07 (Deposition) - 09 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
E-Npp 1, Phosphodiesterase I/Nucleotide Pyrophosphatase 1, Plasma-Cell Membrane Glycoprotein Pc-1, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Abe, A. Sasagawa, N. Tochio, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The Somatomedin B Domain Of Human Ectonucleotide Pyrophosphatase/Phosphodiesterase Family Member
To Be Published
(for further references see the
PDB file header
)
[
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]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_070782 (C10S, chain A, )
2: VAR_070783 (C25S, chain A, )
3: VAR_008873 (Q34Q, chain A, )
4: VAR_070784 (C38Y, chain A, )
5: VAR_037432 (N40S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070782
C
149
S
ENPP1_HUMAN
Disease (COLED)
---
A
C
10
S
2
UniProt
VAR_070783
C
164
S
ENPP1_HUMAN
Disease (COLED)
---
A
C
25
S
3
UniProt
VAR_008873
K
173
Q
ENPP1_HUMAN
Polymorphism
1044498
A
Q
34
Q
4
UniProt
VAR_070784
C
177
Y
ENPP1_HUMAN
Disease (COLED)
---
A
C
38
Y
5
UniProt
VAR_037432
N
179
S
ENPP1_HUMAN
Polymorphism
2273411
A
N
40
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: SMB_2 (-|A:8-50)
2: SMB_1 (-|A:25-45)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SMB_2
PS50958
Somatomedin B (SMB) domain profile.
ENPP1_HUMAN
104-144
145-189
1
-
A:8-50
2
SMB_1
PS00524
Somatomedin B domain (SMB) signature.
ENPP1_HUMAN
120-140
164-184
1
-
A:25-45
[
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:1-7)
Exon 1.4a (A:8-47)
Exon 1.5 (A:47-56 (gaps))
Exon 1.6 (A:56-56)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.3/1.4a
4: Boundary 1.4a/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000360971
1a
ENSE00002158232
chr6:
132129156-132129415
260
ENPP1_HUMAN
1-80
80
1
A:1-7
7
1.2
ENST00000360971
2
ENSE00002156802
chr6:
132168916-132168988
73
ENPP1_HUMAN
81-105
25
0
-
-
1.3
ENST00000360971
3
ENSE00002150919
chr6:
132171130-132171246
117
ENPP1_HUMAN
105-144
40
0
-
-
1.4a
ENST00000360971
4a
ENSE00001147089
chr6:
132172282-132172407
126
ENPP1_HUMAN
144-186
43
1
A:8-47
40
1.5
ENST00000360971
5
ENSE00001147082
chr6:
132173315-132173375
61
ENPP1_HUMAN
186-206
21
1
A:47-56 (gaps)
21
1.6
ENST00000360971
6
ENSE00001147074
chr6:
132176066-132176163
98
ENPP1_HUMAN
206-239
34
1
A:56-56
1
1.7
ENST00000360971
7
ENSE00000763739
chr6:
132179808-132179887
80
ENPP1_HUMAN
239-265
27
0
-
-
1.8
ENST00000360971
8
ENSE00000763737
chr6:
132181527-132181646
120
ENPP1_HUMAN
266-305
40
0
-
-
1.9a
ENST00000360971
9a
ENSE00000763735
chr6:
132182735-132182844
110
ENPP1_HUMAN
306-342
37
0
-
-
1.10
ENST00000360971
10
ENSE00002189940
chr6:
132185646-132185711
66
ENPP1_HUMAN
342-364
23
0
-
-
1.11a
ENST00000360971
11a
ENSE00000763731
chr6:
132186006-132186078
73
ENPP1_HUMAN
364-388
25
0
-
-
1.12
ENST00000360971
12
ENSE00002149800
chr6:
132189158-132189266
109
ENPP1_HUMAN
389-425
37
0
-
-
1.13
ENST00000360971
13
ENSE00002199824
chr6:
132190498-132190629
132
ENPP1_HUMAN
425-469
45
0
-
-
1.14
ENST00000360971
14
ENSE00002185848
chr6:
132193210-132193241
32
ENPP1_HUMAN
469-479
11
0
-
-
1.15
ENST00000360971
15
ENSE00002148681
chr6:
132194063-132194190
128
ENPP1_HUMAN
480-522
43
0
-
-
1.16
ENST00000360971
16
ENSE00002152556
chr6:
132195408-132195477
70
ENPP1_HUMAN
522-545
24
0
-
-
1.17
ENST00000360971
17
ENSE00002200104
chr6:
132196916-132197003
88
ENPP1_HUMAN
546-575
30
0
-
-
1.18a
ENST00000360971
18a
ENSE00002173905
chr6:
132198132-132198301
170
ENPP1_HUMAN
575-631
57
0
-
-
1.19
ENST00000360971
19
ENSE00002168137
chr6:
132199682-132199733
52
ENPP1_HUMAN
632-649
18
0
-
-
1.20
ENST00000360971
20
ENSE00002179244
chr6:
132201020-132201174
155
ENPP1_HUMAN
649-700
52
0
-
-
1.21
ENST00000360971
21
ENSE00002158282
chr6:
132203485-132203614
130
ENPP1_HUMAN
701-744
44
0
-
-
1.22
ENST00000360971
22
ENSE00002177765
chr6:
132204834-132204914
81
ENPP1_HUMAN
744-771
28
0
-
-
1.23
ENST00000360971
23
ENSE00002165145
chr6:
132206071-132206203
133
ENPP1_HUMAN
771-815
45
0
-
-
1.24
ENST00000360971
24
ENSE00002180154
chr6:
132207702-132207864
163
ENPP1_HUMAN
815-869
55
0
-
-
1.25b
ENST00000360971
25b
ENSE00001388381
chr6:
132211481-132216295
4815
ENPP1_HUMAN
870-925
56
0
-
-
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Somatomedin_B_2ys0A01 (A:8-50)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Somatomedin_B]
(13)
Family
:
Somatomedin_B
(13)
Homo sapiens (Human)
(5)
1a
Somatomedin_B-2ys0A01
A:8-50
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