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Asym.Unit (200 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE 1ST ZF-C2H2 DOMAIN FROM HUMAN B-CELL LYMPHOMA 6 PROTEIN
Authors
:
T. Tomizawa, K. Saito, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
02 Apr 07 (Deposition) - 02 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Zf-C2H2, Zinc Binding, Dna Binding, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Tomizawa, K. Saito, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama
Solution Structure Of The 1St Zf-C2H2 Domain From Human B-Cell Lymphoma 6 Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 3)
Info
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1: ZINC_FINGER_C2H2_1 (A:13-34|A:39-39|A:40-40|-|-|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
BCL6_HUMAN
520-541
548-568
576-596
604-624
632-652
660-681
3
A:13-34
A:39-39
A:40-40
-
-
-
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Exons
(3, 3)
Info
All Exons
Exon 1.8 (A:1-7 (gaps))
Exon 1.9 (A:8-39 (gaps))
Exon 1.10a (A:40-43 (gaps))
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1: Boundary 1.7/1.8
2: Boundary 1.8/1.9
3: Boundary 1.9/1.10a
4: Boundary 1.10a/1.11a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000232014
3c
ENSE00001512051
chr3:
187454357-187453878
480
BCL6_HUMAN
-
0
0
-
-
1.4b
ENST00000232014
4b
ENSE00001377234
chr3:
187452695-187452657
39
BCL6_HUMAN
-
0
0
-
-
1.5
ENST00000232014
5
ENSE00002178368
chr3:
187451491-187451321
171
BCL6_HUMAN
1-54
54
0
-
-
1.6c
ENST00000232014
6c
ENSE00000781579
chr3:
187449718-187449497
222
BCL6_HUMAN
54-128
75
0
-
-
1.7
ENST00000232014
7
ENSE00001609887
chr3:
187447809-187446838
972
BCL6_HUMAN
128-452
325
0
-
-
1.8
ENST00000232014
8
ENSE00001591359
chr3:
187446332-187446148
185
BCL6_HUMAN
452-514
63
1
A:1-7 (gaps)
24
1.9
ENST00000232014
9
ENSE00001601736
chr3:
187444686-187444519
168
BCL6_HUMAN
514-570
57
1
A:8-39 (gaps)
45
1.10a
ENST00000232014
10a
ENSE00001721923
chr3:
187443417-187443287
131
BCL6_HUMAN
570-613
44
1
A:40-43 (gaps)
13
1.11a
ENST00000232014
11a
ENSE00001660239
chr3:
187442866-187442729
138
BCL6_HUMAN
614-659
46
0
-
-
1.12b
ENST00000232014
12b
ENSE00001928038
chr3:
187440389-187440186
204
BCL6_HUMAN
660-706
47
0
-
-
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