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2YQM
Asym. Unit
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Asym.Unit (454 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FYVE DOMAIN IN ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 12
Authors
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
30 Mar 07 (Deposition) - 02 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Fyve Domain, Zinc Finger Fyve Domain-Containing Protein 12, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Transport
(Keyword Search:
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Reference
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:29 , CYS A:32 , CYS A:53 , CYS A:56
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:45 , CYS A:48 , CYS A:73 , CYS A:76
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZF_FYVE (A:23-81)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_FYVE
PS50178
Zinc finger FYVE/FYVE-related type profile.
RUFY1_HUMAN
642-700
1
A:23-81
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Exons
(4, 4)
Info
All Exons
Exon 1.18a (A:1-4 (gaps))
Exon 1.19a (A:4-16 (gaps))
Exon 1.20d (A:17-42)
Exon 1.22g (A:43-89)
View:
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All Exon Boundaries
1: Boundary 1.17/1.18a
2: Boundary 1.18a/1.19a
3: Boundary 1.19a/1.20d
4: Boundary 1.20d/1.22g
5: Boundary 1.22g/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000319449
1a
ENSE00001372451
chr5:
178977559-178977880
322
RUFY1_HUMAN
1-104
104
0
-
-
1.3d
ENST00000319449
3d
ENSE00001770679
chr5:
178987026-178987199
174
RUFY1_HUMAN
104-162
59
0
-
-
1.4a
ENST00000319449
4a
ENSE00001240095
chr5:
178989548-178989665
118
RUFY1_HUMAN
162-201
40
0
-
-
1.5a
ENST00000319449
5a
ENSE00001240088
chr5:
178994462-178994563
102
RUFY1_HUMAN
201-235
35
0
-
-
1.6b
ENST00000319449
6b
ENSE00001240082
chr5:
178996303-178996426
124
RUFY1_HUMAN
235-276
42
0
-
-
1.7a
ENST00000319449
7a
ENSE00001240078
chr5:
179004076-179004137
62
RUFY1_HUMAN
277-297
21
0
-
-
1.8
ENST00000319449
8
ENSE00001240074
chr5:
179007948-179008013
66
RUFY1_HUMAN
297-319
23
0
-
-
1.9
ENST00000319449
9
ENSE00001240067
chr5:
179012797-179012866
70
RUFY1_HUMAN
319-342
24
0
-
-
1.11b
ENST00000319449
11b
ENSE00001795047
chr5:
179016547-179016648
102
RUFY1_HUMAN
343-376
34
0
-
-
1.13
ENST00000319449
13
ENSE00001649014
chr5:
179018626-179018742
117
RUFY1_HUMAN
377-415
39
0
-
-
1.14b
ENST00000319449
14b
ENSE00001689103
chr5:
179020479-179020646
168
RUFY1_HUMAN
416-471
56
0
-
-
1.15b
ENST00000319449
15b
ENSE00001689109
chr5:
179021867-179021964
98
RUFY1_HUMAN
472-504
33
0
-
-
1.16c
ENST00000319449
16c
ENSE00001644060
chr5:
179023563-179023682
120
RUFY1_HUMAN
504-544
41
0
-
-
1.17
ENST00000319449
17
ENSE00001742098
chr5:
179025693-179025822
130
RUFY1_HUMAN
544-587
44
0
-
-
1.18a
ENST00000319449
18a
ENSE00001666679
chr5:
179028893-179028987
95
RUFY1_HUMAN
588-619
32
1
A:1-4 (gaps)
6
1.19a
ENST00000319449
19a
ENSE00001750822
chr5:
179032877-179032925
49
RUFY1_HUMAN
619-635
17
1
A:4-16 (gaps)
17
1.20d
ENST00000319449
20d
ENSE00001696739
chr5:
179034583-179034660
78
RUFY1_HUMAN
636-661
26
1
A:17-42
26
1.22g
ENST00000319449
22g
ENSE00001515319
chr5:
179036377-179037027
651
RUFY1_HUMAN
662-708
47
1
A:43-89
47
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_FYVE_2yqmA01 (A:18-82)
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Clan
:
zf-FYVE-PHD
(57)
Family
:
FYVE
(5)
Homo sapiens (Human)
(4)
1a
FYVE-2yqmA01
A:18-82
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Asymmetric Unit 1
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