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2YQG
Asym. Unit
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Asym.Unit (648 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FIRST CADHERIN DOMAIN FROM HUMAN DESMOGLEIN-2
Authors
:
R. Sano, F. Hayashi, M. Yoshida, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
30 Mar 07 (Deposition) - 02 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Cadherin, Hdgc, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Sano, F. Hayashi, M. Yoshida, S. Yokoyama
Solution Structure Of The First Cadherin Domain From Human Desmoglein-2
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_029366 (R10H, chain A, )
2: VAR_062387 (V17M, chain A, )
3: VAR_048508 (Y50C, chain A, )
4: VAR_062388 (V119G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029366
R
49
H
DSG2_HUMAN
Disease (ARVD10)
---
A
R
10
H
2
UniProt
VAR_062387
V
56
M
DSG2_HUMAN
Polymorphism
121913013
A
V
17
M
3
UniProt
VAR_048508
Y
89
C
DSG2_HUMAN
Polymorphism
2230232
A
Y
50
C
4
UniProt
VAR_062388
V
158
G
DSG2_HUMAN
Polymorphism
191143292
A
V
119
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: CADHERIN_2 (A:31-120|A:121-123|-|-)
2: CADHERIN_1 (A:108-118|-|-)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CADHERIN_2
PS50268
Cadherins domain profile.
DSG2_HUMAN
70-159
160-272
282-393
392-499
2
A:31-120
A:121-123
-
-
2
CADHERIN_1
PS00232
Cadherin domain signature.
DSG2_HUMAN
147-157
260-270
487-497
1
A:108-118
-
-
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Exons
(5, 5)
Info
All Exons
Exon 1.1 (A:1-4)
Exon 1.2 (A:5-7)
Exon 1.3 (A:8-33)
Exon 1.4 (A:34-87)
Exon 1.5 (A:88-123)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000261590
1
ENSE00001401353
chr18:
29078027-29078259
233
DSG2_HUMAN
1-15
15
1
A:1-4
4
1.2
ENST00000261590
2
ENSE00001107952
chr18:
29098202-29098237
36
DSG2_HUMAN
16-27
12
1
A:5-7
3
1.3
ENST00000261590
3
ENSE00001107966
chr18:
29099766-29099900
135
DSG2_HUMAN
28-72
45
1
A:8-33
26
1.4
ENST00000261590
4
ENSE00001107958
chr18:
29100766-29100927
162
DSG2_HUMAN
73-126
54
1
A:34-87
54
1.5
ENST00000261590
5
ENSE00001107970
chr18:
29101062-29101206
145
DSG2_HUMAN
127-175
49
1
A:88-123
36
1.6
ENST00000261590
6
ENSE00001107964
chr18:
29102046-29102212
167
DSG2_HUMAN
175-230
56
0
-
-
1.7
ENST00000261590
7
ENSE00001107968
chr18:
29104411-29104548
138
DSG2_HUMAN
231-276
46
0
-
-
1.8
ENST00000261590
8
ENSE00001107962
chr18:
29104666-29104851
186
DSG2_HUMAN
277-338
62
0
-
-
1.9
ENST00000261590
9
ENSE00000998595
chr18:
29110950-29111215
266
DSG2_HUMAN
339-427
89
0
-
-
1.10
ENST00000261590
10
ENSE00000796930
chr18:
29115233-29115375
143
DSG2_HUMAN
427-475
49
0
-
-
1.11
ENST00000261590
11
ENSE00000796931
chr18:
29116165-29116392
228
DSG2_HUMAN
475-551
77
0
-
-
1.12
ENST00000261590
12
ENSE00000796932
chr18:
29118714-29118941
228
DSG2_HUMAN
551-627
77
0
-
-
1.13
ENST00000261590
13
ENSE00000796933
chr18:
29121156-29121277
122
DSG2_HUMAN
627-667
41
0
-
-
1.14
ENST00000261590
14
ENSE00000796934
chr18:
29122483-29122815
333
DSG2_HUMAN
668-778
111
0
-
-
1.15
ENST00000261590
15
ENSE00000796935
chr18:
29125684-29128813
3130
DSG2_HUMAN
779-1118
340
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2yqga_ (A:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cadherin-like
(44)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2yqga_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2yqgA00 (A:1-123)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cadherins
(28)
Human (Homo sapiens)
(5)
1a
2yqgA00
A:1-123
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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