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2YQE
Asym. Unit
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Asym.Unit (544 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE ARID DOMAIN OF JARID1D PROTEIN
Authors
:
W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
30 Mar 07 (Deposition) - 01 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Arid Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Arid Domain Of Jarid1D Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ARID (A:79-169)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARID
PS51011
ARID domain profile.
KDM5D_HUMAN
79-169
1
A:79-169
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Exons
(4, 4)
Info
All Exons
Exon 1.2 (A:72-75)
Exon 1.3 (A:76-76)
Exon 1.4 (A:77-117)
Exon 1.5 (A:118-171)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000317961
1a
ENSE00001733393
Y:21906809-21906557
253
KDM5D_HUMAN
-
0
0
-
-
1.2
ENST00000317961
2
ENSE00000891759
Y:21906439-21906271
169
KDM5D_HUMAN
1-50
50
1
A:72-75
4
1.3
ENST00000317961
3
ENSE00000652508
Y:21905125-21905048
78
KDM5D_HUMAN
51-76
26
1
A:76-76
1
1.4
ENST00000317961
4
ENSE00000652506
Y:21903743-21903621
123
KDM5D_HUMAN
77-117
41
1
A:77-117
41
1.5
ENST00000317961
5
ENSE00001788914
Y:21903374-21903204
171
KDM5D_HUMAN
118-174
57
1
A:118-171
54
1.6
ENST00000317961
6
ENSE00001805865
Y:21901548-21901414
135
KDM5D_HUMAN
175-219
45
0
-
-
1.7
ENST00000317961
7
ENSE00000652503
Y:21897636-21897507
130
KDM5D_HUMAN
220-263
44
0
-
-
1.8
ENST00000317961
8
ENSE00000652502
Y:21897383-21897238
146
KDM5D_HUMAN
263-311
49
0
-
-
1.9
ENST00000317961
9
ENSE00000652501
Y:21894628-21894470
159
KDM5D_HUMAN
312-364
53
0
-
-
1.10
ENST00000317961
10
ENSE00001799734
Y:21894051-21893932
120
KDM5D_HUMAN
365-404
40
0
-
-
1.11
ENST00000317961
11
ENSE00000652498
Y:21893816-21893658
159
KDM5D_HUMAN
405-457
53
0
-
-
1.12c
ENST00000317961
12c
ENSE00001786866
Y:21883197-21883016
182
KDM5D_HUMAN
458-518
61
0
-
-
1.13
ENST00000317961
13
ENSE00001788639
Y:21882920-21882758
163
KDM5D_HUMAN
518-572
55
0
-
-
1.14a
ENST00000317961
14a
ENSE00001628770
Y:21878601-21878482
120
KDM5D_HUMAN
573-612
40
0
-
-
1.15a
ENST00000317961
15a
ENSE00000652494
Y:21878359-21878165
195
KDM5D_HUMAN
613-677
65
0
-
-
1.16b
ENST00000317961
16b
ENSE00001706456
Y:21877890-21877709
182
KDM5D_HUMAN
678-738
61
0
-
-
1.17a
ENST00000317961
17a
ENSE00001758341
Y:21877625-21877501
125
KDM5D_HUMAN
738-780
43
0
-
-
1.17c
ENST00000317961
17c
ENSE00000652491
Y:21877385-21877238
148
KDM5D_HUMAN
780-829
50
0
-
-
1.18b
ENST00000317961
18b
ENSE00000652489
Y:21872358-21872262
97
KDM5D_HUMAN
829-861
33
0
-
-
1.18e
ENST00000317961
18e
ENSE00001277224
Y:21871695-21871337
359
KDM5D_HUMAN
862-981
120
0
-
-
1.19a
ENST00000317961
19a
ENSE00001741532
Y:21870899-21870761
139
KDM5D_HUMAN
981-1027
47
0
-
-
1.20b
ENST00000317961
20b
ENSE00001674577
Y:21870309-21870130
180
KDM5D_HUMAN
1028-1087
60
0
-
-
1.21
ENST00000317961
21
ENSE00001630270
Y:21869957-21869820
138
KDM5D_HUMAN
1088-1133
46
0
-
-
1.22b
ENST00000317961
22b
ENSE00000652484
Y:21869632-21869033
600
KDM5D_HUMAN
1134-1333
200
0
-
-
1.23a
ENST00000317961
23a
ENSE00001670444
Y:21868749-21868680
70
KDM5D_HUMAN
1334-1357
24
0
-
-
1.23c
ENST00000317961
23c
ENSE00001594027
Y:21868526-21868327
200
KDM5D_HUMAN
1357-1423
67
0
-
-
1.24d
ENST00000317961
24d
ENSE00001945799
Y:21868231-21867301
931
KDM5D_HUMAN
1424-1539
116
0
-
-
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SCOP Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_ARID_2yqeA01 (A:79-165)
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Clan
:
no clan defined [family: ARID]
(8)
Family
:
ARID
(8)
Homo sapiens (Human)
(4)
1a
ARID-2yqeA01
A:79-165
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Chain A
Asymmetric Unit 1
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