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2YPA
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
STRUCTURE OF THE SCL:E47:LMO2:LDB1 COMPLEX BOUND TO DNA
Authors
:
K. El Omari, S. J. Hoosdally, K. Tuladhar, D. Karia, E. Ponsele, O. Plat P. Vyas, R. Patient, C. Porcher, E. J. Mancini
Date
:
30 Oct 12 (Deposition) - 31 Jul 13 (Release) - 31 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Immune System, Hematopoiesis, Leukemia
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. El Omari, S. J. Hoosdally, K. Tuladhar, D. Karia, E. Hall-Ponsele, O. Platonova, P. Vyas, R. Patient, C. Porcher, E. J. Mancini
Structural Basis For Lmo2-Driven Recruitment Of The Scl:E47Bhlh Heterodimer To Hematopoietic-Specific Transcriptional Targets.
Cell Rep. V. 4 135 2013
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS C:122 , CYS C:125 , CYS C:144 , ASP C:147
BINDING SITE FOR RESIDUE ZN C1156
2
AC2
SOFTWARE
CYS C:94 , CYS C:97 , HIS C:116 , CYS C:119
BINDING SITE FOR RESIDUE ZN C1157
3
AC3
SOFTWARE
CYS C:57 , CYS C:60 , CYS C:80 , ASP C:83
BINDING SITE FOR RESIDUE ZN C1158
4
AC4
SOFTWARE
CYS C:30 , CYS C:33 , HIS C:51 , CYS C:54
BINDING SITE FOR RESIDUE ZN C1159
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (-|C:92-154)
2: LIM_DOMAIN_1 (C:30-64|C:94-129)
3: BHLH (A:187-239,B:546-599)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
RBTN2_HUMAN
28-90
92-154
1
-
C:92-154
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
RBTN2_HUMAN
30-64
94-129
2
C:30-64
C:94-129
3
BHLH
PS50888
Myc-type, basic helix-loop-helix (bHLH) domain profile.
TAL1_HUMAN
187-239
1
A:187-239
TFE2_HUMAN
549-602
1
B:546-599
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Exons
(2, 2)
Info
All Exons
Exon 1.17c (B:539-605 (gaps))
Exon 1.19b (B:605-611)
View:
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All Exon Boundaries
1: Boundary 1.17a/1.17c
2: Boundary 1.17c/1.19b
3: Boundary 1.19b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000262965
1
ENSE00001724128
chr19:
1652326-1652299
28
TFE2_HUMAN
-
0
0
-
-
1.2
ENST00000262965
2
ENSE00001376842
chr19:
1650286-1650176
111
TFE2_HUMAN
1-24
24
0
-
-
1.3
ENST00000262965
3
ENSE00000651461
chr19:
1646426-1646354
73
TFE2_HUMAN
25-49
25
0
-
-
1.4
ENST00000262965
4
ENSE00000336287
chr19:
1632404-1632331
74
TFE2_HUMAN
49-73
25
0
-
-
1.5
ENST00000262965
5
ENSE00000651464
chr19:
1632115-1632037
79
TFE2_HUMAN
74-100
27
0
-
-
1.6
ENST00000262965
6
ENSE00001151945
chr19:
1627425-1627358
68
TFE2_HUMAN
100-122
23
0
-
-
1.7
ENST00000262965
7
ENSE00000651466
chr19:
1625707-1625575
133
TFE2_HUMAN
123-167
45
0
-
-
1.8
ENST00000262965
8
ENSE00001151938
chr19:
1623999-1623950
50
TFE2_HUMAN
167-183
17
0
-
-
1.9
ENST00000262965
9
ENSE00000651469
chr19:
1622414-1622312
103
TFE2_HUMAN
184-218
35
0
-
-
1.10
ENST00000262965
10
ENSE00001151931
chr19:
1622222-1622053
170
TFE2_HUMAN
218-274
57
0
-
-
1.11
ENST00000262965
11
ENSE00000651472
chr19:
1621969-1621837
133
TFE2_HUMAN
275-319
45
0
-
-
1.12
ENST00000262965
12
ENSE00001151926
chr19:
1621190-1621132
59
TFE2_HUMAN
319-338
20
0
-
-
1.13
ENST00000262965
13
ENSE00000651474
chr19:
1621045-1620967
79
TFE2_HUMAN
339-365
27
0
-
-
1.14
ENST00000262965
14
ENSE00001151915
chr19:
1619852-1619779
74
TFE2_HUMAN
365-389
25
0
-
-
1.15
ENST00000262965
15
ENSE00000873563
chr19:
1619473-1619315
159
TFE2_HUMAN
390-442
53
0
-
-
1.16
ENST00000262965
16
ENSE00000873564
chr19:
1619233-1619110
124
TFE2_HUMAN
443-484
42
0
-
-
1.17a
ENST00000262965
17a
ENSE00000651478
chr19:
1615820-1615685
136
TFE2_HUMAN
484-529
46
0
-
-
1.17c
ENST00000262965
17c
ENSE00000651479
chr19:
1615519-1615284
236
TFE2_HUMAN
529-608
80
1
B:539-605 (gaps)
75
1.19b
ENST00000262965
19b
ENSE00001152057
chr19:
1611848-1609293
2556
TFE2_HUMAN
608-654
47
1
B:605-611
7
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asym.Unit (131 KB)
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