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2YOR
Asym. Unit
Info
Asym.Unit (139 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
CRYSTALLIZATION OF A 45 KDA PEROXYGENASE- PEROXIDASE FROM THE MUSHROOM AGROCYBE AEGERITA AND STRUCTURE DETERMINATION BY SAD UTILIZING ONLY THE HAEM IRON
Authors
:
K. Piontek, E. Strittmatter, R. Ullrich, D. A. Plattner, M. Hofrichter
Date
:
26 Oct 12 (Deposition) - 23 Oct 13 (Release) - 01 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Peroxidase/Peroxygenase, Unspecific/Aromatic Peroxygenase, Heme, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Piontek, E. Strittmatter, R. Ullrich, G. Grobe, M. J. Pecyna, M. Kluge, K. Scheibner, M. Hofrichter, D. A. Plattner
Structural Basis Of Substrate Conversion In A New Aromatic Peroxygenase: P450 Functionality With Benefits
J. Biol. Chem. V. 288 34767 2013
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(9, 51)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: 1H-IMIDAZOL-5-YLMETHANOL (MZ0a)
6b: 1H-IMIDAZOL-5-YLMETHANOL (MZ0b)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7m: N-ACETYL-D-GLUCOSAMINE (NAGm)
7n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7o: N-ACETYL-D-GLUCOSAMINE (NAGo)
7p: N-ACETYL-D-GLUCOSAMINE (NAGp)
7q: N-ACETYL-D-GLUCOSAMINE (NAGq)
7r: N-ACETYL-D-GLUCOSAMINE (NAGr)
7s: N-ACETYL-D-GLUCOSAMINE (NAGs)
7t: N-ACETYL-D-GLUCOSAMINE (NAGt)
7u: N-ACETYL-D-GLUCOSAMINE (NAGu)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
8d: SULFATE ION (SO4d)
8e: SULFATE ION (SO4e)
8f: SULFATE ION (SO4f)
9a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
6
Ligand/Ion
BETA-D-MANNOSE
2
CL
4
Ligand/Ion
CHLORIDE ION
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
5
MG
2
Ligand/Ion
MAGNESIUM ION
6
MZ0
2
Ligand/Ion
1H-IMIDAZOL-5-YLMETHANOL
7
NAG
21
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
SO4
6
Ligand/Ion
SULFATE ION
9
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:36 , GLY A:38 , LEU A:39 , LEU A:67 , PHE A:69 , ALA A:77 , THR A:78 , PHE A:121 , GLU A:122 , GLY A:123 , SER A:126 , MET A:127 , THR A:128 , ARG A:189 , GLU A:196 , PHE A:199 , MG A:353 , MZ0 A:354 , HOH A:2152
BINDING SITE FOR RESIDUE HEM A 350
02
AC2
SOFTWARE
GLU A:122 , GLY A:123 , SER A:126 , HEM A:350 , HOH A:2151 , HOH A:2152
BINDING SITE FOR RESIDUE MG A 353
03
AC3
SOFTWARE
ALA A:77 , THR A:192 , GLU A:196 , PHE A:199 , HEM A:350 , HOH A:2096 , HOH A:2318
BINDING SITE FOR RESIDUE MZ0 A 354
04
AC4
SOFTWARE
PRO A:5 , VAL A:57 , TYR A:79 , ASP A:91 , THR A:306 , ASN A:307 , PHE A:310 , HOH A:2077 , HOH A:2297 , HOH A:2344
BINDING SITE FOR RESIDUE BMA A 501
05
AC5
SOFTWARE
THR A:297 , VAL A:298 , HOH A:2345
BINDING SITE FOR RESIDUE SO4 A1355
06
AC6
SOFTWARE
PRO A:8 , ASP A:70 , ASN A:71 , HOH A:2008
BINDING SITE FOR RESIDUE CL A1356
07
AC7
SOFTWARE
ARG A:97 , THR A:99 , ARG A:100 , HOH A:2118 , HOH A:2346
BINDING SITE FOR RESIDUE SO4 A1357
08
AC8
SOFTWARE
TYR A:151 , ARG A:154 , LYS A:171
BINDING SITE FOR RESIDUE SO4 A1358
09
AC9
SOFTWARE
PRO B:35 , CYS B:36 , PRO B:37 , LEU B:39 , VAL B:63 , LEU B:67 , ALA B:77 , THR B:78 , PHE B:121 , GLU B:122 , GLY B:123 , SER B:126 , MET B:127 , THR B:128 , ARG B:189 , GLU B:196 , PHE B:199 , LEU B:203 , MG B:353 , MZ0 B:354 , HOH B:2044 , HOH B:2126 , HOH B:2162
BINDING SITE FOR RESIDUE HEM B 350
10
BC1
SOFTWARE
GLU B:122 , GLY B:123 , SER B:126 , HEM B:350 , HOH B:2125 , HOH B:2126
BINDING SITE FOR RESIDUE MG B 353
11
BC2
SOFTWARE
ALA B:77 , THR B:192 , GLU B:196 , PHE B:199 , HEM B:350 , HOH B:2076 , HOH B:2266
BINDING SITE FOR RESIDUE MZ0 B 354
12
BC3
SOFTWARE
LEU B:88 , ILE B:89 , ASP B:91 , ALA B:303 , THR B:306 , HOH B:2092
BINDING SITE FOR RESIDUE BMA B 501
13
BC4
SOFTWARE
ASN B:182 , SER B:184 , VAL B:186 , ASP B:187 , ARG B:257 , HOH B:2169 , HOH B:2174 , HOH B:2285 , HOH B:2290
BINDING SITE FOR RESIDUE NAG B 511
14
BC5
SOFTWARE
ASN B:61 , CL B:1358
BINDING SITE FOR RESIDUE TRS B1355
15
BC6
SOFTWARE
ASP B:70 , ASN B:71 , PRO B:238 , HOH B:2008
BINDING SITE FOR RESIDUE CL B1356
16
BC7
SOFTWARE
ARG B:97 , HIS B:138 , HOH B:2038 , HOH B:2040 , HOH B:2291
BINDING SITE FOR RESIDUE SO4 B1357
17
BC8
SOFTWARE
GLY B:7 , TRS B:1355
BINDING SITE FOR RESIDUE CL B1358
18
BC9
SOFTWARE
LYS B:171 , MAN B:365 , MAN B:366 , MAN B:367 , HOH B:2274
BINDING SITE FOR RESIDUE SO4 B1359
19
CC1
SOFTWARE
ARG B:97 , LYS B:98 , THR B:99 , ARG B:100 , HOH B:2292
BINDING SITE FOR RESIDUE SO4 B1360
20
CC2
SOFTWARE
THR B:143
BINDING SITE FOR RESIDUE CL B1361
21
CC3
SOFTWARE
ASN A:11 , SER A:13 , HOH A:2020 , HOH A:2343
BINDING SITE FOR MONO-SACCHARIDE NAG A 411 BOUND TO ASN A 11
22
CC4
SOFTWARE
ASN A:141 , HOH A:2169 , HOH A:2320 , NAG B:401
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 361 THROUGH BMA A 363 BOUND TO ASN A 141
23
CC5
SOFTWARE
PHE A:155 , GLY A:156 , ASN A:161 , THR A:163 , GLN A:213 , HOH A:2181 , HOH A:2323 , HOH A:2327 , HOH A:2330 , HOH A:2331 , HOH A:2332 , HOH A:2333 , HOH A:2334 , GLU B:146 , ASP B:150 , ASN B:153 , CYS B:278 , ALA B:317 , CYS B:319
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 371 THROUGH MAN A 375 BOUND TO ASN A 161
24
CC6
SOFTWARE
PHE A:133 , ASN A:182 , HOH A:2161 , HOH A:2163 , HOH A:2335 , HOH A:2336 , HOH A:2337 , HOH A:2339
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 381 THROUGH BMA A 383 BOUND TO ASN A 182
25
CC7
SOFTWARE
ASN A:286
BINDING SITE FOR MONO-SACCHARIDE NAG A 391 BOUND TO ASN A 286
26
CC8
SOFTWARE
PRO A:294 , ASN A:295 , HOH A:2340 , HOH A:2341 , HOH A:2342
BINDING SITE FOR MONO-SACCHARIDE NAG A 401 BOUND TO ASN A 295
27
CC9
SOFTWARE
ASN B:11 , SER B:13 , HOH B:2288
BINDING SITE FOR MONO-SACCHARIDE NAG B 411 BOUND TO ASN B 11
28
DC1
SOFTWARE
LEU B:16 , PHE B:133 , PHE B:134 , ASN B:141 , LYS B:171 , GLN B:174 , ASP B:175 , THR B:179 , PRO B:181 , ASP B:231 , SO4 B:1359 , HOH B:2145 , HOH B:2163 , HOH B:2200 , HOH B:2218 , HOH B:2267 , HOH B:2268 , HOH B:2269 , HOH B:2270 , HOH B:2271 , HOH B:2272 , HOH B:2273 , HOH B:2274 , HOH B:2275 , HOH B:2276 , HOH B:2277 , HOH B:2278 , HOH B:2279 , HOH B:2280 , HOH B:2281 , HOH B:2282
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 361 THROUGH MAN B 368 BOUND TO ASN B 141
29
DC2
SOFTWARE
CYS A:278 , GLU A:282 , ALA A:317 , CYS A:319 , HOH A:2313 , PHE B:155 , GLY B:156 , ASN B:161 , THR B:163 , GLN B:213 , HOH B:2153 , HOH B:2157
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 371 THROUGH NAG B 372 BOUND TO ASN B 161
30
DC3
SOFTWARE
PHE B:133 , ASN B:182 , HOH B:2284 , HOH B:2286
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 381 THROUGH NAG B 382 BOUND TO ASN B 182
31
DC4
SOFTWARE
HOH A:2329 , GLU B:282 , ASN B:286 , VAL B:322 , HOH B:2262
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 391 THROUGH NAG B 392 BOUND TO ASN B 286
32
DC5
SOFTWARE
BMA A:363 , PRO B:294 , ASN B:295 , HOH B:2240
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 401 THROUGH NAG B 402 BOUND TO ASN B 295
[
close Site info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HEME_HALOPEROXIDASE (A:20-248,B:20-248)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEME_HALOPEROXIDASE
PS51405
Heme haloperoxidase family profile.
APO1_AGRAE
63-291
2
A:20-248
B:20-248
[
close PROSITE info
]
Exons
(0, 0)
Info
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (139 KB)
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