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2YMD
Biol. Unit 2
Info
Asym.Unit (779 KB)
Biol.Unit 1 (747 KB)
Biol.Unit 2 (377 KB)
Biol.Unit 3 (376 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A MUTANT BINDING PROTEIN (5HTBP-ACHBP) IN COMPLEX WITH SEROTONIN (5-HYDROXYTRYPTAMINE)
Authors
:
D. Kesters, A. J. Thompson, M. Brams, R. V. Elk, R. Spurny, M. Geitmann, J. M. Villalgordo, A. Guskov, U. H. Danielson, S. C. R. Lummis, A. B. Smi C. Ulens
Date
:
09 Oct 12 (Deposition) - 12 Dec 12 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Biol. Unit 2: A,B,C,D,E (1x)
Biol. Unit 3: F,G,H,I,J (1x)
Keywords
:
Receptor, Pentameric Ligand-Gated Ion Channel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kesters, A. J. Thompson, M. Brams, R. Van Elk, R. Spurny, M. Geitmann, J. M. Villalgordo, A. Guskov, U. Helena Danielson, S. C. Lummis, A. B. Smit, C. Ulens
Structural Basis Of Ligand Recognition In 5-Ht(3) Receptors
Embo Rep. V. 14 49 2013
[
close entry info
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
2h: PHOSPHATE ION (PO4h)
2i: PHOSPHATE ION (PO4i)
2j: PHOSPHATE ION (PO4j)
3a: SEROTONIN (SROa)
3b: SEROTONIN (SROb)
3c: SEROTONIN (SROc)
3d: SEROTONIN (SROd)
3e: SEROTONIN (SROe)
3f: SEROTONIN (SROf)
3g: SEROTONIN (SROg)
3h: SEROTONIN (SROh)
3i: SEROTONIN (SROi)
3j: SEROTONIN (SROj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
9
Ligand/Ion
GLYCEROL
2
PO4
5
Ligand/Ion
PHOSPHATE ION
3
SRO
5
Ligand/Ion
SEROTONIN
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC2 (SOFTWARE)
14: CC3 (SOFTWARE)
15: CC4 (SOFTWARE)
16: CC5 (SOFTWARE)
17: CC6 (SOFTWARE)
18: CC7 (SOFTWARE)
19: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH B:2289 , HOH B:2290 , HOH B:2293 , PRO C:96 , VAL C:97 , VAL D:99 , LEU D:100 , SER D:101 , PRO D:102
BINDING SITE FOR RESIDUE GOL B1211
02
AC2
SOFTWARE
HOH D:2279 , HOH D:2280 , HOH D:2282 , HOH D:2283 , PRO H:96 , VAL H:97 , VAL I:99 , LEU I:100 , SER I:101 , PRO I:102
BINDING SITE FOR RESIDUE GOL D1213
03
AC3
SOFTWARE
TYR A:91 , TRP A:145 , VAL A:146 , CYS A:188 , CYS A:189 , TYR A:193 , HOH A:2243 , ILE B:104 , VAL B:106 , MET B:114 , ILE B:116
BINDING SITE FOR RESIDUE SRO A1213
04
AC5
SOFTWARE
TYR B:91 , TRP B:145 , VAL B:146 , CYS B:188 , CYS B:189 , TYR B:193 , HOH B:2222 , ILE C:104 , VAL C:106 , MET C:114 , ILE C:116
BINDING SITE FOR RESIDUE SRO B1212
05
AC6
SOFTWARE
TYR C:91 , TRP C:145 , VAL C:146 , CYS C:188 , CYS C:189 , TYR C:193 , HOH C:2214 , HOH C:2279 , ILE D:104 , VAL D:106 , ILE D:116
BINDING SITE FOR RESIDUE SRO C1213
06
AC7
SOFTWARE
TYR D:91 , TRP D:145 , VAL D:146 , CYS D:188 , CYS D:189 , TYR D:193 , HOH D:2284 , ILE E:104 , VAL E:106 , MET E:114 , ILE E:116
BINDING SITE FOR RESIDUE SRO D1214
07
AC8
SOFTWARE
ILE A:104 , VAL A:106 , MET A:114 , ILE A:116 , HOH A:2213 , TYR E:91 , TRP E:145 , VAL E:146 , CYS E:188 , CYS E:189 , TYR E:193
BINDING SITE FOR RESIDUE SRO E1213
08
BC5
SOFTWARE
ARG C:95 , LYS D:40 , ASP D:49 , SER D:122 , HOH D:2098 , HOH D:2100 , HOH D:2101 , HOH D:2285
BINDING SITE FOR RESIDUE GOL D1215
09
BC6
SOFTWARE
PRO C:19 , TRP C:84 , TYR C:147 , HOH C:2042 , HOH C:2163 , HOH C:2280 , HOH C:2281 , LYS D:8 , THR D:78 , SER D:79
BINDING SITE FOR RESIDUE GOL C1214
10
BC8
SOFTWARE
LYS A:8 , THR A:78 , SER A:79 , HOH A:2018 , HOH A:2019 , PRO E:19 , TRP E:84 , TYR E:147 , HOH E:2139 , HOH E:2225
BINDING SITE FOR RESIDUE GOL E1214
11
BC9
SOFTWARE
ASP C:24 , HOH C:2050 , HOH C:2058 , GLN D:1 , ALA D:2 , ASN D:3 , LEU D:4 , HOH D:2001
BINDING SITE FOR RESIDUE GOL D1216
12
CC1
SOFTWARE
PRO A:19 , TRP A:84 , THR A:85 , TYR A:147 , HOH A:2182 , HOH A:2302
BINDING SITE FOR RESIDUE GOL A1214
13
CC2
SOFTWARE
ARG A:95 , HOH A:2196 , LYS B:40 , ASP B:49 , SER B:122 , GOL B:1215 , HOH B:2105 , HOH B:2295
BINDING SITE FOR RESIDUE GOL B1213
14
CC3
SOFTWARE
LYS A:23 , SER A:148 , GLU A:151 , GLU A:191 , HOH A:2292 , ASP B:75 , ARG B:77
BINDING SITE FOR RESIDUE PO4 A1215
15
CC4
SOFTWARE
SER B:148 , PHE B:150 , GLU B:151 , GLU B:191 , HOH B:2297 , ARG C:77
BINDING SITE FOR RESIDUE PO4 B1214
16
CC5
SOFTWARE
LYS C:23 , SER C:148 , PHE C:150 , GLU C:151 , GLU C:191 , HOH C:2270 , ARG D:77
BINDING SITE FOR RESIDUE PO4 C1215
17
CC6
SOFTWARE
LYS D:23 , SER D:148 , PHE D:150 , GLU D:151 , GLU D:191 , HOH D:2046 , HOH D:2266 , ARG E:77
BINDING SITE FOR RESIDUE PO4 D1217
18
CC7
SOFTWARE
ARG A:77 , HOH A:2167 , LYS E:23 , SER E:148 , GLU E:151 , GLU E:191
BINDING SITE FOR RESIDUE PO4 E1215
19
DC6
SOFTWARE
GLU B:47 , ARG B:95 , SER B:122 , GOL B:1213 , HOH B:2092 , LYS C:40 , ARG C:120
BINDING SITE FOR RESIDUE GOL B1215
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d2ymda_ (A:)
1b: SCOP_d2ymdb_ (B:)
1c: SCOP_d2ymdc_ (C:)
1d: SCOP_d2ymdd_ (D:)
1e: SCOP_d2ymde_ (E:)
1f: SCOP_d2ymdf_ (F:)
1g: SCOP_d2ymdg_ (G:)
1h: SCOP_d2ymdh_ (H:)
1i: SCOP_d2ymdi_ (I:)
1j: SCOP_d2ymdj_ (J:)
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Protein Domains
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)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nicotinic receptor ligand binding domain-like
(58)
Superfamily
:
Nicotinic receptor ligand binding domain-like
(58)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
California sea hare (Aplysia californica) [TaxId: 6500]
(36)
1a
d2ymda_
A:
1b
d2ymdb_
B:
1c
d2ymdc_
C:
1d
d2ymdd_
D:
1e
d2ymde_
E:
1f
d2ymdf_
F:
1g
d2ymdg_
G:
1h
d2ymdh_
H:
1i
d2ymdi_
I:
1j
d2ymdj_
J:
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CATH Domains
(0, 0)
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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