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2YLL
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS
Authors
:
B. Pluvinage, M. A. Higgins, D. W. Abbott, C. Robb, A. B. Dalia, L. Deng, J. N. Weiser, T. B. Parsons, A. J. Fairbanks, D. J. Vocadlo, A. B. Borast
Date
:
02 Jun 11 (Deposition) - 21 Sep 11 (Release) - 23 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Pluvinage, M. A. Higgins, D. W. Abbott, C. Robb, A. B. Dalia, L. Deng, J. N. Weiser, T. B. Parsons, A. J. Fairbanks, D. J. Vocadlo, A. B. Boraston
Inhibition Of The Pneumococcal Virulence Factor Strh And Molecular Insights Into N-Glycan Recognition And Hydrolysis
Structure V. 19 1603 2011
[
close entry info
]
Hetero Components
(4, 72)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: IODIDE ION (IODa)
3aa: IODIDE ION (IODaa)
3ab: IODIDE ION (IODab)
3ac: IODIDE ION (IODac)
3ad: IODIDE ION (IODad)
3ae: IODIDE ION (IODae)
3af: IODIDE ION (IODaf)
3ag: IODIDE ION (IODag)
3ah: IODIDE ION (IODah)
3ai: IODIDE ION (IODai)
3aj: IODIDE ION (IODaj)
3ak: IODIDE ION (IODak)
3al: IODIDE ION (IODal)
3am: IODIDE ION (IODam)
3an: IODIDE ION (IODan)
3ao: IODIDE ION (IODao)
3ap: IODIDE ION (IODap)
3aq: IODIDE ION (IODaq)
3ar: IODIDE ION (IODar)
3as: IODIDE ION (IODas)
3at: IODIDE ION (IODat)
3au: IODIDE ION (IODau)
3av: IODIDE ION (IODav)
3aw: IODIDE ION (IODaw)
3ax: IODIDE ION (IODax)
3ay: IODIDE ION (IODay)
3az: IODIDE ION (IODaz)
3b: IODIDE ION (IODb)
3ba: IODIDE ION (IODba)
3bb: IODIDE ION (IODbb)
3bc: IODIDE ION (IODbc)
3bd: IODIDE ION (IODbd)
3be: IODIDE ION (IODbe)
3bf: IODIDE ION (IODbf)
3bg: IODIDE ION (IODbg)
3bh: IODIDE ION (IODbh)
3bi: IODIDE ION (IODbi)
3bj: IODIDE ION (IODbj)
3bk: IODIDE ION (IODbk)
3bl: IODIDE ION (IODbl)
3bm: IODIDE ION (IODbm)
3bn: IODIDE ION (IODbn)
3bo: IODIDE ION (IODbo)
3c: IODIDE ION (IODc)
3d: IODIDE ION (IODd)
3e: IODIDE ION (IODe)
3f: IODIDE ION (IODf)
3g: IODIDE ION (IODg)
3h: IODIDE ION (IODh)
3i: IODIDE ION (IODi)
3j: IODIDE ION (IODj)
3k: IODIDE ION (IODk)
3l: IODIDE ION (IODl)
3m: IODIDE ION (IODm)
3n: IODIDE ION (IODn)
3o: IODIDE ION (IODo)
3p: IODIDE ION (IODp)
3q: IODIDE ION (IODq)
3r: IODIDE ION (IODr)
3s: IODIDE ION (IODs)
3t: IODIDE ION (IODt)
3u: IODIDE ION (IODu)
3v: IODIDE ION (IODv)
3w: IODIDE ION (IODw)
3x: IODIDE ION (IODx)
3y: IODIDE ION (IODy)
3z: IODIDE ION (IODz)
4a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
IOD
67
Ligand/Ion
IODIDE ION
4
PE4
1
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
[
close Hetero Component info
]
Sites
(60, 60)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:361 , HOH A:2026 , HOH A:2299 , HOH A:2300 , HOH A:2301 , HOH A:2302 , HOH A:2484
BINDING SITE FOR RESIDUE CA A1615
02
AC2
SOFTWARE
ASP A:477 , ASP A:485 , HOH A:2228 , HOH A:2448 , HOH A:2449 , HOH A:2594
BINDING SITE FOR RESIDUE CA A1616
03
AC3
SOFTWARE
TYR A:317 , LYS A:370 , SER A:373 , GLU A:384 , TYR A:386 , GLY A:445 , HOH A:2354
BINDING SITE FOR RESIDUE PE4 A1617
04
AC4
SOFTWARE
ARG A:196 , TYR A:482 , TRP A:517 , ASP A:519 , HOH A:2026 , HOH A:2302
BINDING SITE FOR RESIDUE EDO A1618
05
AC5
SOFTWARE
ASP A:360 , GLU A:361 , PHE A:415 , TRP A:439 , TYR A:469 , TRP A:517 , HOH A:2213 , HOH A:2300
BINDING SITE FOR RESIDUE EDO A1619
06
AC6
SOFTWARE
GLU A:543 , HOH A:2012
BINDING SITE FOR RESIDUE IOD A1620
07
AC7
SOFTWARE
LYS A:210
BINDING SITE FOR RESIDUE IOD A1621
08
AC8
SOFTWARE
GLU A:503
BINDING SITE FOR RESIDUE IOD A1622
09
AC9
SOFTWARE
PRO A:521 , SER A:522
BINDING SITE FOR RESIDUE IOD A1623
10
BC1
SOFTWARE
LYS A:452 , GLU A:456
BINDING SITE FOR RESIDUE IOD A1624
11
BC2
SOFTWARE
HOH A:2165
BINDING SITE FOR RESIDUE IOD A1625
12
BC3
SOFTWARE
ASN A:609
BINDING SITE FOR RESIDUE IOD A1627
13
BC4
SOFTWARE
ASP A:400 , HOH A:2368
BINDING SITE FOR RESIDUE IOD A1628
14
BC5
SOFTWARE
LYS A:306 , ASN A:312 , ASN A:489 , ASN A:493 , IOD A:1656 , HOH A:2460
BINDING SITE FOR RESIDUE IOD A1629
15
BC6
SOFTWARE
THR A:497 , SER A:498
BINDING SITE FOR RESIDUE IOD A1630
16
BC7
SOFTWARE
THR A:595
BINDING SITE FOR RESIDUE IOD A1631
17
BC8
SOFTWARE
HOH A:2365
BINDING SITE FOR RESIDUE IOD A1632
18
BC9
SOFTWARE
ARG A:524 , HOH A:2445
BINDING SITE FOR RESIDUE IOD A1633
19
CC1
SOFTWARE
LYS A:205
BINDING SITE FOR RESIDUE IOD A1634
20
CC2
SOFTWARE
LYS A:501
BINDING SITE FOR RESIDUE IOD A1636
21
CC3
SOFTWARE
ARG A:524 , ARG A:529
BINDING SITE FOR RESIDUE IOD A1637
22
CC4
SOFTWARE
ASN A:539 , ARG A:590
BINDING SITE FOR RESIDUE IOD A1639
23
CC5
SOFTWARE
ARG A:524 , SER A:526 , SER A:528
BINDING SITE FOR RESIDUE IOD A1640
24
CC6
SOFTWARE
PRO A:508 , ILE A:509 , LYS A:579 , IOD A:1642 , HOH A:2019 , HOH A:2338
BINDING SITE FOR RESIDUE IOD A1641
25
CC7
SOFTWARE
LYS A:186 , IOD A:1641 , HOH A:2019
BINDING SITE FOR RESIDUE IOD A1642
26
CC8
SOFTWARE
GLN A:311 , HOH A:2230 , HOH A:2450
BINDING SITE FOR RESIDUE IOD A1643
27
CC9
SOFTWARE
ASN A:399
BINDING SITE FOR RESIDUE IOD A1645
28
DC1
SOFTWARE
GLN A:332
BINDING SITE FOR RESIDUE IOD A1646
29
DC2
SOFTWARE
GLU A:202 , HOH A:2096
BINDING SITE FOR RESIDUE IOD A1647
30
DC3
SOFTWARE
ARG A:324 , ASN A:364 , HOH A:2299
BINDING SITE FOR RESIDUE IOD A1648
31
DC4
SOFTWARE
GLY A:445 , ASP A:447 , HOH A:2148 , HOH A:2416
BINDING SITE FOR RESIDUE IOD A1649
32
DC5
SOFTWARE
SER A:583 , HOH A:2086
BINDING SITE FOR RESIDUE IOD A1650
33
DC6
SOFTWARE
GLU A:353 , HOH A:2294 , IOD A:9010
BINDING SITE FOR RESIDUE IOD A1651
34
DC7
SOFTWARE
GLU A:254 , HOH A:2160
BINDING SITE FOR RESIDUE IOD A1652
35
DC8
SOFTWARE
ASN A:258
BINDING SITE FOR RESIDUE IOD A1653
36
DC9
SOFTWARE
GLU A:569 , HOH A:2262
BINDING SITE FOR RESIDUE IOD A1654
37
EC1
SOFTWARE
GLN A:460 , GLU A:576
BINDING SITE FOR RESIDUE IOD A1655
38
EC2
SOFTWARE
ASN A:312 , ASN A:314 , LYS A:321 , IOD A:1629 , HOH A:2232 , HOH A:2466
BINDING SITE FOR RESIDUE IOD A1656
39
EC3
SOFTWARE
GLN A:203 , PRO A:527 , IOD A:1662 , HOH A:2298 , HOH A:2488
BINDING SITE FOR RESIDUE IOD A1657
40
EC4
SOFTWARE
THR A:567
BINDING SITE FOR RESIDUE IOD A1658
41
EC5
SOFTWARE
GLU A:206 , IOD A:1662
BINDING SITE FOR RESIDUE IOD A1659
42
EC6
SOFTWARE
ALA A:568 , HOH A:2403
BINDING SITE FOR RESIDUE IOD A1660
43
EC7
SOFTWARE
ARG A:251
BINDING SITE FOR RESIDUE IOD A1661
44
EC8
SOFTWARE
GLU A:206 , IOD A:1657 , IOD A:1659 , HOH A:2038
BINDING SITE FOR RESIDUE IOD A1662
45
EC9
SOFTWARE
ASN A:422 , SER A:423 , VAL A:448
BINDING SITE FOR RESIDUE IOD A1665
46
FC1
SOFTWARE
HOH A:2540
BINDING SITE FOR RESIDUE IOD A1666
47
FC2
SOFTWARE
ASP A:594 , HOH A:2572 , IOD A:9009
BINDING SITE FOR RESIDUE IOD A1667
48
FC3
SOFTWARE
LYS A:197 , ASN A:265 , TYR A:525
BINDING SITE FOR RESIDUE IOD A1668
49
FC4
SOFTWARE
LYS A:411 , LYS A:575 , HOH A:2546 , IOD A:9011
BINDING SITE FOR RESIDUE IOD A1669
50
FC5
SOFTWARE
MET A:180 , ASN A:181 , HOH A:2002 , HOH A:2006 , HOH A:2007
BINDING SITE FOR RESIDUE IOD A1670
51
FC6
SOFTWARE
ASN A:539 , IOD A:9005
BINDING SITE FOR RESIDUE IOD A1671
52
FC7
SOFTWARE
GLY A:241 , ARG A:565
BINDING SITE FOR RESIDUE IOD A1672
53
FC8
SOFTWARE
LEU A:612
BINDING SITE FOR RESIDUE IOD A9001
54
FC9
SOFTWARE
IOD A:1671 , HOH A:2280 , HOH A:2495
BINDING SITE FOR RESIDUE IOD A9005
55
GC1
SOFTWARE
HOH A:2179 , HOH A:2217 , HOH A:2281
BINDING SITE FOR RESIDUE IOD A9006
56
GC2
SOFTWARE
HOH A:2082
BINDING SITE FOR RESIDUE IOD A9007
57
GC3
SOFTWARE
IOD A:1667 , HOH A:2352
BINDING SITE FOR RESIDUE IOD A9009
58
GC4
SOFTWARE
IOD A:1651 , IOD A:9011
BINDING SITE FOR RESIDUE IOD A9010
59
GC5
SOFTWARE
IOD A:1669 , HOH A:2546 , IOD A:9010
BINDING SITE FOR RESIDUE IOD A9011
60
GC6
SOFTWARE
LYS A:406 , ASP A:562 , HOH A:2373 , HOH A:2534
BINDING SITE FOR RESIDUE IOD A9013
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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)
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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