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2YKR
Asym. Unit
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Asym.Unit (916 KB)
Biol.Unit 1 (907 KB)
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(1)
Title
:
30S RIBOSOMAL SUBUNIT WITH RSGA BOUND IN THE PRESENCE OF GMPPNP
Authors
:
Q. Guo, Y. Yuan, Y. Xu, B. Feng, L. Liu, K. Chen, J. Lei, N. Gao
Date
:
30 May 11 (Deposition) - 24 Aug 11 (Release) - 20 Mar 13 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
9.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,W
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,W (1x)
Keywords
:
Ribosome-Hydrolase Complex, Ribosome Biogenesis, Yjeq, Circularly Permutated Gtpase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Guo, Y. Yuan, Y. Xu, B. Feng, L. Liu, K. Chen, M. Sun, Z. Yang, J. Lei, N. Gao
Structural Basis For The Function Of A Small Gtpase Rsga On The 30S Ribosomal Subunit Maturation Revealed By Cryoelectron Microscopy.
Proc. Natl. Acad. Sci. Usa V. 108 13100 2011
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_RS5_ECOLI_001 (R19L, chain E, )
02: VAR_RS5_ECOLI_002 (V20E, chain E, )
03: VAR_RS5_ECOLI_003 (S21P, chain E, )
04: VAR_RS17_ECOLI_001 (H30P, chain Q, )
05: VAR_RS12_ECOLI_001 (K42R, chain L, )
06: VAR_RS4_ECOLI_001 (Y50D, chain D, )
07: VAR_RS17_ECOLI_002 (S67F, chain Q, )
08: VAR_RS5_ECOLI_004 (G103R, chain E, )
09: VAR_RS13_ECOLI_001 (N104H, chain M, )
10: VAR_RS13_ECOLI_002 (N104K, chain M, )
11: VAR_RS5_ECOLI_005 (R111G, chain E, )
12: VAR_RS5_ECOLI_006 (R111L, chain E, )
13: VAR_RS5_ECOLI_007 (R111S, chain E, )
14: VAR_RS5_ECOLI_008 (E150S, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_RS5_ECOLI_001
*
R
20
L
RS5_ECOLI
---
---
E
R
19
L
02
UniProt
VAR_RS5_ECOLI_002
*
V
21
E
RS5_ECOLI
---
---
E
V
20
E
03
UniProt
VAR_RS5_ECOLI_003
*
S
22
P
RS5_ECOLI
---
---
E
S
21
P
04
UniProt
VAR_RS17_ECOLI_001
*
H
31
P
RS17_ECOLI
---
---
Q
H
30
P
05
UniProt
VAR_RS12_ECOLI_001
*
K
43
R
RS12_ECOLI
---
---
L
K
42
R
06
UniProt
VAR_RS4_ECOLI_001
*
Y
51
D
RS4_ECOLI
---
---
D
Y
50
D
07
UniProt
VAR_RS17_ECOLI_002
*
S
68
F
RS17_ECOLI
---
---
Q
S
67
F
08
UniProt
VAR_RS5_ECOLI_004
*
G
104
R
RS5_ECOLI
---
---
E
G
103
R
09
UniProt
VAR_RS13_ECOLI_001
*
N
105
H
RS13_ECOLI
---
---
M
N
104
H
10
UniProt
VAR_RS13_ECOLI_002
*
N
105
K
RS13_ECOLI
---
---
M
N
104
K
11
UniProt
VAR_RS5_ECOLI_005
*
R
112
G
RS5_ECOLI
---
---
E
R
111
G
12
UniProt
VAR_RS5_ECOLI_006
*
R
112
L
RS5_ECOLI
---
---
E
R
111
L
13
UniProt
VAR_RS5_ECOLI_007
*
R
112
S
RS5_ECOLI
---
---
E
R
111
S
14
UniProt
VAR_RS5_ECOLI_008
*
E
151
S
RS5_ECOLI
---
---
E
E
150
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(25, 25)
Info
All PROSITE Patterns/Profiles
01: RIBOSOMAL_S16 (P:2-11,P:2-11)
02: RIBOSOMAL_S13_2 (M:3-110,M:3-110)
03: S5_DSRBD (E:10-73)
04: RIBOSOMAL_S21 (U:12-24,U:12-24)
05: RIBOSOMAL_S7 (G:19-45)
06: RIBOSOMAL_S18 (R:20-43)
07: RIBOSOMAL_S5 (E:27-59)
08: RIBOSOMAL_S10 (J:29-44,J:29-44)
09: RIBOSOMAL_S15 (O:38-68)
10: KH_TYPE_2 (C:38-106,C:38-106)
11: RIBOSOMAL_S12 (L:42-49,L:42-49)
12: RIBOSOMAL_S6 (F:43-52,F:43-52)
13: RIBOSOMAL_S19 (S:52-76,S:52-76)
14: RIBOSOMAL_S17 (Q:55-67,Q:55-67)
15: RIBOSOMAL_S14 (N:62-84,N:62-84)
16: RIBOSOMAL_S9 (I:68-86,I:68-86)
17: RIBOSOMAL_S13_1 (M:86-99,M:86-99)
18: RIBOSOMAL_S4 (D:93-117,D:93-117)
19: S4 (D:95-155,D:95-155)
20: RIBOSOMAL_S11 (K:96-118,K:96-118)
21: RIBOSOMAL_S8 (H:99-116,H:99-116)
22: G_CP (W:104-273)
23: ENGC_GTPASE (W:121-271)
24: RIBOSOMAL_S2_2 (B:157-181,B:157-181)
25: RIBOSOMAL_S3 (C:162-196,C:162-196)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_S16
PS00732
Ribosomal protein S16 signature.
RS16_ECOLI
2-11
1
P:2-11
RS16_ECOLU
2-11
1
P:2-11
2
RIBOSOMAL_S13_2
PS50159
Ribosomal protein S13 family profile.
RS13_ECOK1
4-111
1
M:3-110
RS13_ECOLI
4-111
1
M:3-110
3
S5_DSRBD
PS50881
S5 double stranded RNA-binding domain profile.
RS5_ECOLI
11-74
1
E:10-73
4
RIBOSOMAL_S21
PS01181
Ribosomal protein S21 signature.
RS21_ECOLI
13-25
1
U:12-24
RS21_ECOSM
13-25
1
U:12-24
5
RIBOSOMAL_S7
PS00052
Ribosomal protein S7 signature.
RS7_ECOLI
20-46
1
G:19-45
6
RIBOSOMAL_S18
PS00057
Ribosomal protein S18 signature.
RS18_ECOLI
21-44
1
R:20-43
7
RIBOSOMAL_S5
PS00585
Ribosomal protein S5 signature.
RS5_ECOLI
28-60
1
E:27-59
8
RIBOSOMAL_S10
PS00361
Ribosomal protein S10 signature.
RS10_ECO24
29-44
1
J:29-44
RS10_ECOLI
29-44
1
J:29-44
9
RIBOSOMAL_S15
PS00362
Ribosomal protein S15 signature.
RS15_ECOLI
39-69
1
O:38-68
10
KH_TYPE_2
PS50823
Type-2 KH domain profile.
RS3_ECOK1
39-107
1
C:38-106
RS3_ECOLI
39-107
1
C:38-106
11
RIBOSOMAL_S12
PS00055
Ribosomal protein S12 signature.
RS12_ECOL6
43-50
1
L:42-49
RS12_ECOLI
43-50
1
L:42-49
12
RIBOSOMAL_S6
PS01048
Ribosomal protein S6 signature.
RS6_ECOLI
43-52
1
F:43-52
RS6_ECOSE
43-52
1
F:43-52
13
RIBOSOMAL_S19
PS00323
Ribosomal protein S19 signature.
RS19_ECOLI
53-77
1
S:52-76
RS19_ECOSE
53-77
1
S:52-76
14
RIBOSOMAL_S17
PS00056
Ribosomal protein S17 signature.
RS17_ECO57
56-68
1
Q:55-67
RS17_ECOLI
56-68
1
Q:55-67
15
RIBOSOMAL_S14
PS00527
Ribosomal protein S14 signature.
RS14_ECO8A
63-85
1
N:62-84
RS14_ECOLI
63-85
1
N:62-84
16
RIBOSOMAL_S9
PS00360
Ribosomal protein S9 signature.
RS9_ECOL5
69-87
1
I:68-86
RS9_ECOLI
69-87
1
I:68-86
17
RIBOSOMAL_S13_1
PS00646
Ribosomal protein S13 signature.
RS13_ECOK1
87-100
1
M:86-99
RS13_ECOLI
87-100
1
M:86-99
18
RIBOSOMAL_S4
PS00632
Ribosomal protein S4 signature.
RS4_ECOK1
94-118
1
D:93-117
RS4_ECOLI
94-118
1
D:93-117
19
S4
PS50889
S4 RNA-binding domain profile.
RS4_ECOK1
96-156
1
D:95-155
RS4_ECOLI
96-156
1
D:95-155
20
RIBOSOMAL_S11
PS00054
Ribosomal protein S11 signature.
RS11_ECO8A
97-119
1
K:96-118
RS11_ECOLI
97-119
1
K:96-118
21
RIBOSOMAL_S8
PS00053
Ribosomal protein S8 signature.
RS8_ECOLI
100-117
1
H:99-116
RS8_ECOSE
100-117
1
H:99-116
22
G_CP
PS51721
Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile.
RSGA_ECOLI
104-273
1
W:104-273
23
ENGC_GTPASE
PS50936
EngC GTPase domain profile.
RSGA_ECOLI
121-271
1
W:121-271
24
RIBOSOMAL_S2_2
PS00963
Ribosomal protein S2 signature 2.
RS2_ECOLI
158-182
1
B:157-181
RS2_ECO7I
158-182
1
B:157-181
25
RIBOSOMAL_S3
PS00548
Ribosomal protein S3 signature.
RS3_ECOK1
163-197
1
C:162-196
RS3_ECOLI
163-197
1
C:162-196
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