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2YJD
Asym. Unit
Info
Asym.Unit (87 KB)
Biol.Unit 1 (81 KB)
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(1)
Title
:
STAPLED PEPTIDE BOUND TO ESTROGEN RECEPTOR BETA
Authors
:
C. Phillips, L. R. Roberts, M. Schade, A. Bent, N. L. Davies, R. Moore, A. D. Pannifer, D. G. Brown, A. R. Pickford, S. L. Irving
Date
:
19 May 11 (Deposition) - 03 Aug 11 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hormone Receptor-Peptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Phillips, L. R. Roberts, M. Schade, R. Bazin, A. Bent, N. L. Davies, R. Moore, A. D. Pannifer, A. R. Pickford, S. H. Prior, C. M. Read, A. Scott, D. G. Brown, B. Xu, S. L. Irving
Design And Structure Of Stapled Peptides Binding To Estrogen Receptors.
J. Am. Chem. Soc. V. 133 9696 2011
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: 2-METHYL-L-NORLEUCINE (MK8a)
2b: 2-METHYL-L-NORLEUCINE (MK8b)
2c: 2-METHYL-L-NORLEUCINE (MK8c)
2d: 2-METHYL-L-NORLEUCINE (MK8d)
3a: AMINO GROUP (NH2a)
3b: AMINO GROUP (NH2b)
4a: 4-(2-PROPAN-2-YLOXYBENZIMIDAZOL-1-... (YJDa)
4b: 4-(2-PROPAN-2-YLOXYBENZIMIDAZOL-1-... (YJDb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
MK8
4
Mod. Amino Acid
2-METHYL-L-NORLEUCINE
3
NH2
2
Mod. Amino Acid
AMINO GROUP
4
YJD
2
Ligand/Ion
4-(2-PROPAN-2-YLOXYBENZIMIDAZOL-1-YL)PHENOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:299 , ALA A:302 , GLU A:305 , LEU A:339 , ARG A:346 , PHE A:356 , ILE A:373 , ILE A:376 , PHE A:377 , LEU A:380 , LEU A:476 , LEU A:491 , HOH A:2014 , HOH A:2099
BINDING SITE FOR RESIDUE YJD A1498
2
AC2
SOFTWARE
MET B:295 , ALA B:302 , GLU B:305 , MET B:336 , LEU B:339 , ARG B:346 , PHE B:356 , ILE B:373 , ILE B:376 , PHE B:377 , LEU B:380 , LEU B:476 , LEU B:491 , HOH B:2019 , HOH B:2094
BINDING SITE FOR RESIDUE YJD B1498
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(5, 10)
Info
All Exons
Exon 1.6 (A:263-318 | B:263-318)
Exon 1.8 (A:318-364 | B:318-364)
Exon 1.9 (A:364-409 | B:364-409)
Exon 1.10 (A:409-469 (gaps) | B:409-469 (gaps...)
Exon 1.11b (A:469-497 | B:469-497)
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11b
6: Boundary 1.11b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000341099
2b
ENSE00001848078
chr14:
64761078-64760751
328
ESR2_HUMAN
-
0
0
-
-
1.3
ENST00000341099
3
ENSE00001193559
chr14:
64749793-64749342
452
ESR2_HUMAN
1-121
121
0
-
-
1.4
ENST00000341099
4
ENSE00001170893
chr14:
64746871-64746699
173
ESR2_HUMAN
121-179
59
0
-
-
1.5
ENST00000341099
5
ENSE00001750014
chr14:
64735629-64735513
117
ESR2_HUMAN
179-218
40
0
-
-
1.6
ENST00000341099
6
ENSE00001170836
chr14:
64727466-64727167
300
ESR2_HUMAN
218-318
101
2
A:263-318
B:263-318
56
56
1.8
ENST00000341099
8
ENSE00001170869
chr14:
64724082-64723944
139
ESR2_HUMAN
318-364
47
2
A:318-364
B:318-364
47
47
1.9
ENST00000341099
9
ENSE00001193507
chr14:
64716397-64716264
134
ESR2_HUMAN
364-409
46
2
A:364-409
B:364-409
46
46
1.10
ENST00000341099
10
ENSE00001096736
chr14:
64701868-64701688
181
ESR2_HUMAN
409-469
61
2
A:409-469 (gaps)
B:409-469 (gaps)
61
61
1.11b
ENST00000341099
11b
ENSE00001564600
chr14:
64700041-64699806
236
ESR2_HUMAN
469-530
62
2
A:469-497
B:469-497
29
29
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2yjdb_ (B:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Estrogen receptor beta
(28)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d2yjdb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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