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2YIZ
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (317 KB)
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(1)
Title
:
X-RAY STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DODECIN
Authors
:
X. Vinzenz, W. Grosse, U. Linne, B. Meissner, L. -O. Essen
Date
:
17 May 11 (Deposition) - 12 Oct 11 (Release) - 12 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (3x)
Keywords
:
Flavoprotein, Flavin Binding Protein, Protein-Engineering, Putative Storage Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
X. Vinzenz, W. Grosse, U. Linne, B. Meissner, L. -O. Essen
Chemical Engineering Of Mycobacterium Tuberculosis Dodecin Hybrids.
Chem. Commun. (Camb. ) V. 47 11071 2011
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: COENZYME A (COAa)
2b: COENZYME A (COAb)
2c: COENZYME A (COAc)
2d: COENZYME A (COAd)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
3b: FLAVIN MONONUCLEOTIDE (FMNb)
3c: FLAVIN MONONUCLEOTIDE (FMNc)
3d: FLAVIN MONONUCLEOTIDE (FMNd)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
5a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
COA
4
Ligand/Ion
COENZYME A
3
FMN
4
Ligand/Ion
FLAVIN MONONUCLEOTIDE
4
GOL
5
Ligand/Ion
GLYCEROL
5
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:34 , PHE A:64 , ARG A:65 , LEU A:66 , GLU A:67
BINDING SITE FOR RESIDUE COA A1069
02
AC2
SOFTWARE
HIS A:3 , TYR A:5 , ASP A:37 , TRP A:38 , ARG A:65 , HOH A:2051 , HOH A:2052 , GLN C:57 , FMN C:1070 , ARG D:45 , HIS D:47 , GLN D:57
BINDING SITE FOR RESIDUE FMN A1070
03
AC3
SOFTWARE
VAL A:7 , ILE A:8 , GLU A:9 , LYS A:61 , VAL C:7 , ILE C:8 , GLU C:9 , LYS C:61 , VAL D:7 , ILE D:8 , GLU D:9 , LYS D:61
BINDING SITE FOR RESIDUE GOL A1071
04
AC4
SOFTWARE
ARG A:6 , ARG C:6 , ARG D:6
BINDING SITE FOR RESIDUE GOL A1072
05
AC5
SOFTWARE
VAL D:41
BINDING SITE FOR RESIDUE GOL A1073
06
AC6
SOFTWARE
ARG B:34 , PHE B:64 , ARG B:65 , LEU B:66 , GLU B:67
BINDING SITE FOR RESIDUE COA B1069
07
AC7
SOFTWARE
ARG A:45 , HIS A:47 , GLN A:57 , HIS B:3 , TYR B:5 , ASP B:37 , GLN B:57 , ARG B:65 , HOH B:2040 , HOH B:2068 , FMN D:1070
BINDING SITE FOR RESIDUE FMN B1070
08
AC8
SOFTWARE
VAL A:18 , ASP A:19 , HOH A:2026 , VAL B:18 , ASP B:19 , HOH B:2020 , VAL D:18 , ASP D:19
BINDING SITE FOR RESIDUE GOL B1071
09
AC9
SOFTWARE
VAL B:7 , GLU B:9 , LYS B:61
BINDING SITE FOR RESIDUE GOL B1072
10
BC1
SOFTWARE
ARG B:6 , HOH B:2011
BINDING SITE FOR RESIDUE CL B1073
11
BC2
SOFTWARE
ARG C:34 , PHE C:64 , ARG C:65 , LEU C:66 , GLU C:67
BINDING SITE FOR RESIDUE COA C1069
12
BC3
SOFTWARE
FMN A:1070 , HIS C:3 , TYR C:5 , ASP C:37 , ARG C:45 , HIS C:47 , GLN C:57 , ARG C:65 , HOH C:2034 , HOH C:2056 , GLN D:57
BINDING SITE FOR RESIDUE FMN C1070
13
BC4
SOFTWARE
VAL C:18 , ASP C:19 , HOH C:2057
BINDING SITE FOR RESIDUE TRS C1071
14
BC5
SOFTWARE
ARG A:6 , ARG C:6 , ARG D:6 , HOH D:2010
BINDING SITE FOR RESIDUE CL C1072
15
BC6
SOFTWARE
ARG D:34 , PHE D:64 , ARG D:65 , LEU D:66 , GLU D:67
BINDING SITE FOR RESIDUE COA D1069
16
BC7
SOFTWARE
GLN A:57 , ARG B:45 , HIS B:47 , GLN B:57 , FMN B:1070 , HIS D:3 , TYR D:5 , ASP D:37 , ARG D:65 , HOH D:2037 , HOH D:2038
BINDING SITE FOR RESIDUE FMN D1070
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2yiza_ (A:)
1b: SCOP_d2yizb_ (B:)
1c: SCOP_d2yizc_ (C:)
1d: SCOP_d2yizd_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Dodecin subunit-like
(56)
Superfamily
:
Dodecin-like
(33)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Mycobacterium tuberculosis [TaxId: 83332]
(2)
1a
d2yiza_
A:
1b
d2yizb_
B:
1c
d2yizc_
C:
1d
d2yizd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Chain A
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Chain D
Asymmetric Unit 1
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