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2YIV
Asym. Unit
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Asym.Unit (332 KB)
Biol.Unit 1 (645 KB)
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(1)
Title
:
NI,FE-CODH WITH N-BUTYLISOCYANATE STATE
Authors
:
J. H. Jeoung, H. Dobbek
Date
:
16 May 11 (Deposition) - 28 Mar 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.28
Chains
:
Asym. Unit : X
Biol. Unit 1: X (2x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Jeoung, H. Dobbek
N-Butyl Isocyanide Oxidation At The [Nife4S4Oh(X)] Cluster Of Co Dehydrogenase.
J. Biol. Inorg. Chem. V. 17 167 2012
[
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Hetero Components
(6, 6)
Info
All Hetero Components
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
1a: FE (III) ION (FEa)
3a: N-BUTYL ISOCYANIDE (NBNa)
4a: IRON/SULFUR CLUSTER (SF4a)
5a: FE(3)-NI(1)-S(4) CLUSTER (WCCa)
6a: N-BUTYLFORMAMIDE (YIVa)
View:
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No.
Name
Count
Type
Full Name
1
FE
1
Ligand/Ion
FE (III) ION
2
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
3
NBN
1
Ligand/Ion
N-BUTYL ISOCYANIDE
4
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
5
WCC
1
Ligand/Ion
FE(3)-NI(1)-S(4) CLUSTER
6
YIV
1
Ligand/Ion
N-BUTYLFORMAMIDE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS X:48 , CYS X:51 , GLY X:54 , CYS X:56 , CYS X:70 , ARG X:80 , MET X:199
BINDING SITE FOR RESIDUE SF4 X5000
2
AC2
SOFTWARE
CYS X:39 , GLY X:42 , CYS X:47
BINDING SITE FOR RESIDUE FES X5001
3
AC3
SOFTWARE
HIS X:261 , CYS X:294 , CYS X:295 , SER X:312 , CYS X:333 , GLY X:445 , CYS X:446 , CYS X:476 , CYS X:526 , MET X:560 , LYS X:563 , YIV X:5003 , FE X:5004 , HOH X:5100
BINDING SITE FOR RESIDUE WCC X5002
4
AC4
SOFTWARE
HIS X:93 , ALA X:444 , GLY X:445 , CYS X:526 , LYS X:563 , ALA X:564 , ILE X:567 , WCC X:5002 , HOH X:5100
BINDING SITE FOR RESIDUE YIV X5003
5
AC5
SOFTWARE
HIS X:261 , CYS X:295 , CYS X:526 , LYS X:563 , WCC X:5002 , HOH X:5100
BINDING SITE FOR RESIDUE FE X5004
6
AC6
SOFTWARE
LEU X:82 , VAL X:565 , ILE X:580 , PRO X:584 , ILE X:586 , PHE X:608
BINDING SITE FOR RESIDUE NBN X5005
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
(1, 1)
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1a: SCOP_d2yivx_ (X:)
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(
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Organisms
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(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Prismane protein-like
(31)
Superfamily
:
Prismane protein-like
(31)
Family
:
Carbon monoxide dehydrogenase
(15)
Protein domain
:
Ni-containing carbon monoxide dehydrogenase
(10)
Carboxydothermus hydrogenoformans [TaxId: 129958]
(9)
1a
d2yivx_
X:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (332 KB)
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