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2YI1
Asym. Unit
Info
Asym.Unit (111 KB)
Biol.Unit 1 (206 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF N-ACETYLMANNOSAMINE KINASE IN COMPLEX WITH N-ACETYL MANNOSAMINE 6-PHOSPHATE AND ADP.
Authors
:
J. Martinez, L. D. Nguyen, E. Tauberger, S. Hinderlich, W. Reutter, H. F W. Saenger, S. Moniot
Date
:
10 May 11 (Deposition) - 29 Feb 12 (Release) - 02 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase, Sugar Kinase, Rok Family
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Martinez, L. D. Nguyen, E. Tauberger, S. Hinderlich, W. Reutter, H. Fan, W. Saenger, S. Moniot
Crystal Structures Of N-Acetylmannosamine Kinase Provide Insights Into Enzyme Specificity And Inhibition
J. Biol. Chem. V. 287 13656 2012
[
close entry info
]
Hetero Components
(10, 14)
Info
All Hetero Components
01a: NONAETHYLENE GLYCOL (2PEa)
02a: ACETATE ION (ACTa)
03a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
04a: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3a)
05a: 2-(ACETYLAMINO)-2-DEOXY-6-O-PHOSPH... (BMXa)
06a: CALCIUM ION (CAa)
06b: CALCIUM ION (CAb)
07a: 1,2-ETHANEDIOL (EDOa)
07b: 1,2-ETHANEDIOL (EDOb)
07c: 1,2-ETHANEDIOL (EDOc)
07d: 1,2-ETHANEDIOL (EDOd)
08a: MAGNESIUM ION (MGa)
09a: TETRAETHYLENE GLYCOL (PG4a)
10a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PE
1
Ligand/Ion
NONAETHYLENE GLYCOL
2
ACT
1
Ligand/Ion
ACETATE ION
3
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
4
BM3
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MANNOPYRANOSE
5
BMX
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-6-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE
6
CA
2
Ligand/Ion
CALCIUM ION
7
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
8
MG
1
Ligand/Ion
MAGNESIUM ION
9
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
10
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:415 , GLY A:416 , GLY A:475 , GLY A:476 , ARG A:477 , SER A:488 , THR A:489 , LEU A:491 , ASN A:516 , ASP A:517 , GLY A:543 , THR A:544 , GLY A:545 , ILE A:546 , GLY A:547 , GLU A:566 , HIS A:569 , GLU A:588 , ADP A:1727 , HOH A:2066 , HOH A:2087 , HOH A:2141
BINDING SITE FOR RESIDUE BMX A1000
02
AC2
SOFTWARE
GLY A:475 , GLY A:476 , ARG A:477 , SER A:488 , THR A:489 , LEU A:491 , ASN A:516 , ASP A:517 , ILE A:546 , GLY A:547 , GLU A:566 , HIS A:569 , GLU A:588 , HOH A:2066 , HOH A:2141
BINDING SITE FOR RESIDUE BM3 A1001
03
AC3
SOFTWARE
ASP A:413 , ADP A:1727 , HOH A:2002 , HOH A:2004 , HOH A:2142
BINDING SITE FOR RESIDUE MG A1717
04
AC4
SOFTWARE
GLN A:493 , VAL A:702
BINDING SITE FOR RESIDUE CA A1718
05
AC5
SOFTWARE
ASN A:516 , ASN A:519 , GLY A:548 , ALA A:564 , ALA A:565 , HOH A:2046 , HOH A:2066
BINDING SITE FOR RESIDUE CA A1719
06
AC6
SOFTWARE
VAL A:431 , LYS A:432 , LYS A:433 , TYR A:442 , GLU A:459 , GLU A:494 , ASN A:496 , VAL A:498 , HOH A:2016
BINDING SITE FOR RESIDUE 2PE A1720
07
AC7
SOFTWARE
GLY A:416 , ASN A:438 , LYS A:440 , ASP A:700 , HOH A:2026 , HOH A:2029 , HOH A:2030 , HOH A:2056
BINDING SITE FOR RESIDUE PG4 A1721
08
AC8
SOFTWARE
GLN A:451
BINDING SITE FOR RESIDUE EDO A1722
09
AC9
SOFTWARE
ARG A:481 , GLY A:559
BINDING SITE FOR RESIDUE EDO A1723
10
BC1
SOFTWARE
GLN A:692 , ASP A:693 , VAL A:694 , ASP A:695
BINDING SITE FOR RESIDUE EDO A1724
11
BC2
SOFTWARE
ASN A:418 , THR A:435
BINDING SITE FOR RESIDUE EDO A1725
12
BC3
SOFTWARE
HIS A:552 , HIS A:558 , GLY A:559 , HOH A:2094
BINDING SITE FOR RESIDUE ACT A1726
13
BC4
SOFTWARE
GLY A:415 , GLY A:416 , THR A:417 , ASN A:418 , ARG A:420 , THR A:544 , GLY A:593 , LEU A:625 , VAL A:670 , BMX A:1000 , MG A:1717 , HOH A:2110 , HOH A:2143
BINDING SITE FOR RESIDUE ADP A1727
14
BC5
SOFTWARE
HIS A:569 , CYS A:579 , CYS A:581 , CYS A:586
BINDING SITE FOR RESIDUE ZN A2000
[
close Site info
]
SAPs(SNPs)/Variants
(16, 16)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_017955 (A460V, chain A, )
02: VAR_021781 (I472T, chain A, )
03: VAR_021782 (N519S, chain A, )
04: VAR_017956 (A524V, chain A, )
05: VAR_017957 (F528C, chain A, )
06: VAR_017958 (I557T, chain A, )
07: VAR_017959 (V572L, chain A, )
08: VAR_017960 (G576E, chain A, )
09: VAR_017961 (I587T, chain A, )
10: VAR_021783 (A600T, chain A, )
11: VAR_021784 (A630T, chain A, )
12: VAR_017962 (A631T, chain A, )
13: VAR_017963 (A631V, chain A, )
14: VAR_017964 (Y675H, chain A, )
15: VAR_017965 (V696M, chain A, )
16: VAR_017966 (M712T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_017955
A
460
V
GLCNE_HUMAN
Disease (NM)
---
A
A
460
V
02
UniProt
VAR_021781
I
472
T
GLCNE_HUMAN
Disease (NM)
---
A
I
472
T
03
UniProt
VAR_021782
N
519
S
GLCNE_HUMAN
Disease (IBM2)
---
A
N
519
S
04
UniProt
VAR_017956
A
524
V
GLCNE_HUMAN
Disease (IBM2)
---
A
A
524
V
05
UniProt
VAR_017957
F
528
C
GLCNE_HUMAN
Disease (IBM2)
---
A
F
528
C
06
UniProt
VAR_017958
I
557
T
GLCNE_HUMAN
Disease (IBM2)
---
A
I
557
T
07
UniProt
VAR_017959
V
572
L
GLCNE_HUMAN
Disease (NM)
121908632
A
V
572
L
08
UniProt
VAR_017960
G
576
E
GLCNE_HUMAN
Disease (IBM2)
---
A
G
576
E
09
UniProt
VAR_017961
I
587
T
GLCNE_HUMAN
Disease (IBM2)
---
A
I
587
T
10
UniProt
VAR_021783
A
600
T
GLCNE_HUMAN
Disease (IBM2)
---
A
A
600
T
11
UniProt
VAR_021784
A
630
T
GLCNE_HUMAN
Disease (NM)
---
A
A
630
T
12
UniProt
VAR_017962
A
631
T
GLCNE_HUMAN
Disease (IBM2)
---
A
A
631
T
13
UniProt
VAR_017963
A
631
V
GLCNE_HUMAN
Disease (NM)
---
A
A
631
V
14
UniProt
VAR_017964
Y
675
H
GLCNE_HUMAN
Disease (IBM2)
---
A
Y
675
H
15
UniProt
VAR_017965
V
696
M
GLCNE_HUMAN
Disease (IBM2)
121908627
A
V
696
M
16
UniProt
VAR_017966
M
712
T
GLCNE_HUMAN
Disease (IBM2)
28937594
A
M
712
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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