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2YHY
Asym. Unit
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Asym.Unit (114 KB)
Biol.Unit 1 (212 KB)
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(1)
Title
:
STRUCTURE OF N-ACETYLMANNOSAMINE KINASE IN COMPLEX WITH N-ACETYLMANNOSAMINE AND ADP
Authors
:
J. Martinez, L. D. Nguyen, E. Tauberger, S. Hinderlich, W. Reutter, H. F W. Saenger, S. Moniot
Date
:
10 May 11 (Deposition) - 29 Feb 12 (Release) - 02 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase, Sugar Kinase, Sialic Acid, Rok Family
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Martinez, L. D. Nguyen, E. Tauberger, S. Hinderlich, W. Reutter, H. Fan, W. Saenger, S. Moniot
Crystal Structures Of N-Acetylmannosamine Kinase Provide Insights Into Enzyme Specificity And Inhibition
J. Biol. Chem. V. 287 13656 2012
[
close entry info
]
Hetero Components
(10, 14)
Info
All Hetero Components
01a: NONAETHYLENE GLYCOL (2PEa)
02a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
03a: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3a)
04a: CALCIUM ION (CAa)
05a: CHLORIDE ION (CLa)
06a: 1,2-ETHANEDIOL (EDOa)
06b: 1,2-ETHANEDIOL (EDOb)
06c: 1,2-ETHANEDIOL (EDOc)
07a: MAGNESIUM ION (MGa)
08a: TETRAETHYLENE GLYCOL (PG4a)
09a: TRIETHYLENE GLYCOL (PGEa)
09b: TRIETHYLENE GLYCOL (PGEb)
09c: TRIETHYLENE GLYCOL (PGEc)
10a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PE
1
Ligand/Ion
NONAETHYLENE GLYCOL
2
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
BM3
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MANNOPYRANOSE
4
CA
1
Ligand/Ion
CALCIUM ION
5
CL
1
Ligand/Ion
CHLORIDE ION
6
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
7
MG
1
Ligand/Ion
MAGNESIUM ION
8
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
9
PGE
3
Ligand/Ion
TRIETHYLENE GLYCOL
10
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:475 , GLY A:476 , ARG A:477 , SER A:488 , THR A:489 , ASN A:516 , ASP A:517 , ILE A:546 , GLY A:547 , GLU A:566 , HIS A:569 , GLU A:588 , HOH A:2084 , HOH A:2110 , HOH A:2196
BINDING SITE FOR RESIDUE BM3 A1000
02
AC2
SOFTWARE
HIS A:569 , CYS A:579 , CYS A:581 , CYS A:586
BINDING SITE FOR RESIDUE ZN A2000
03
AC3
SOFTWARE
ASN A:516 , ASN A:519 , GLY A:548 , ALA A:564 , ALA A:565 , HOH A:2056 , HOH A:2084
BINDING SITE FOR RESIDUE CA A1718
04
AC4
SOFTWARE
VAL A:431 , LYS A:432 , LYS A:433 , GLU A:459 , GLU A:494 , ASN A:496 , SER A:497 , VAL A:498 , HOH A:2021
BINDING SITE FOR RESIDUE 2PE A1719
05
AC5
SOFTWARE
ASP A:605 , GLU A:606 , ASP A:693 , VAL A:694 , ASP A:695 , HOH A:2162
BINDING SITE FOR RESIDUE PG4 A1720
06
AC6
SOFTWARE
ARG A:501 , VAL A:512 , TRP A:513 , HOH A:2198
BINDING SITE FOR RESIDUE PGE A1722
07
AC7
SOFTWARE
ASP A:413 , ADP A:1727 , HOH A:2003 , HOH A:2004 , HOH A:2005 , HOH A:2009
BINDING SITE FOR RESIDUE MG A1723
08
AC8
SOFTWARE
GLN A:451 , HOH A:2114
BINDING SITE FOR RESIDUE EDO A1724
09
AC9
SOFTWARE
GLY A:416 , THR A:417 , PHE A:437 , ASN A:438 , LYS A:440 , PGE A:1726 , HOH A:2030 , HOH A:2034
BINDING SITE FOR RESIDUE PGE A1725
10
BC1
SOFTWARE
LYS A:440 , ASP A:700 , LEU A:701 , VAL A:702 , PGE A:1725
BINDING SITE FOR RESIDUE PGE A1726
11
BC2
SOFTWARE
GLY A:415 , GLY A:416 , THR A:417 , ASN A:418 , ARG A:420 , THR A:544 , GLY A:593 , LEU A:625 , VAL A:670 , MG A:1723 , HOH A:2004 , HOH A:2009 , HOH A:2109 , HOH A:2110 , HOH A:2147
BINDING SITE FOR RESIDUE ADP A1727
12
BC3
SOFTWARE
HIS A:552 , LEU A:556 , ILE A:557 , HIS A:558 , GLY A:559 , HOH A:2118
BINDING SITE FOR RESIDUE EDO A1728
13
BC4
SOFTWARE
GLN A:493 , LEU A:701 , VAL A:702
BINDING SITE FOR RESIDUE CL A1729
[
close Site info
]
SAPs(SNPs)/Variants
(16, 16)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_017955 (A460V, chain A, )
02: VAR_021781 (I472T, chain A, )
03: VAR_021782 (N519S, chain A, )
04: VAR_017956 (A524V, chain A, )
05: VAR_017957 (F528C, chain A, )
06: VAR_017958 (I557T, chain A, )
07: VAR_017959 (V572L, chain A, )
08: VAR_017960 (G576E, chain A, )
09: VAR_017961 (I587T, chain A, )
10: VAR_021783 (A600T, chain A, )
11: VAR_021784 (A630T, chain A, )
12: VAR_017962 (A631T, chain A, )
13: VAR_017963 (A631V, chain A, )
14: VAR_017964 (Y675H, chain A, )
15: VAR_017965 (V696M, chain A, )
16: VAR_017966 (M712T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_017955
A
460
V
GLCNE_HUMAN
Disease (NM)
---
A
A
460
V
02
UniProt
VAR_021781
I
472
T
GLCNE_HUMAN
Disease (NM)
---
A
I
472
T
03
UniProt
VAR_021782
N
519
S
GLCNE_HUMAN
Disease (IBM2)
---
A
N
519
S
04
UniProt
VAR_017956
A
524
V
GLCNE_HUMAN
Disease (IBM2)
---
A
A
524
V
05
UniProt
VAR_017957
F
528
C
GLCNE_HUMAN
Disease (IBM2)
---
A
F
528
C
06
UniProt
VAR_017958
I
557
T
GLCNE_HUMAN
Disease (IBM2)
---
A
I
557
T
07
UniProt
VAR_017959
V
572
L
GLCNE_HUMAN
Disease (NM)
121908632
A
V
572
L
08
UniProt
VAR_017960
G
576
E
GLCNE_HUMAN
Disease (IBM2)
---
A
G
576
E
09
UniProt
VAR_017961
I
587
T
GLCNE_HUMAN
Disease (IBM2)
---
A
I
587
T
10
UniProt
VAR_021783
A
600
T
GLCNE_HUMAN
Disease (IBM2)
---
A
A
600
T
11
UniProt
VAR_021784
A
630
T
GLCNE_HUMAN
Disease (NM)
---
A
A
630
T
12
UniProt
VAR_017962
A
631
T
GLCNE_HUMAN
Disease (IBM2)
---
A
A
631
T
13
UniProt
VAR_017963
A
631
V
GLCNE_HUMAN
Disease (NM)
---
A
A
631
V
14
UniProt
VAR_017964
Y
675
H
GLCNE_HUMAN
Disease (IBM2)
---
A
Y
675
H
15
UniProt
VAR_017965
V
696
M
GLCNE_HUMAN
Disease (IBM2)
121908627
A
V
696
M
16
UniProt
VAR_017966
M
712
T
GLCNE_HUMAN
Disease (IBM2)
28937594
A
M
712
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (114 KB)
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