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2YGX
Asym. Unit
Info
Asym.Unit (268 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (69 KB)
Biol.Unit 4 (69 KB)
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(1)
Title
:
STRUCTURE OF THE MIXED-FUNCTION P450 MYCG IN P21 SPACE GROUP
Authors
:
S. Li, P. M. Kells, F. U. Rutaganira, D. H. Sherman, L. M. Podust
Date
:
22 Apr 11 (Deposition) - 29 Feb 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.39
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Electron Transport, Mycinamicin Biosynthesis, Metal Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Li, D. R. Tietz, F. U. Rutaganira, P. M. Kells, Y. Anzai, F. Kato, T. C. Pochapsky, D. H. Sherman, L. M. Podust
Substrate Recognition By The Multifunctional Cytochrome P450 Mycg In Mycinamicin Hydroxylation And Epoxidation Reactions.
J. Biol. Chem. V. 287 37880 2012
[
close entry info
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: SUCCINIC ACID (SINa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
12
Ligand/Ion
GLYCEROL
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
SIN
1
Ligand/Ion
SUCCINIC ACID
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL D:135 , ARG D:140 , THR D:240 , THR D:241 , ALA D:244 , GLY D:389 , PRO D:390 , HOH D:2061
BINDING SITE FOR RESIDUE GOL D1398
02
AC2
SOFTWARE
LEU A:83 , LEU A:84 , HIS A:91 , ARG A:95 , PHE A:102 , LEU A:231 , ALA A:234 , GLY A:235 , SER A:238 , THR A:239 , PHE A:286 , ARG A:288 , GLY A:338 , PHE A:339 , GLY A:340 , HIS A:344 , CYS A:346 , GLY A:348 , HOH A:2074 , HOH A:2104
BINDING SITE FOR RESIDUE HEM A 450
03
AC3
SOFTWARE
LEU B:83 , LEU B:84 , HIS B:91 , ARG B:95 , LEU B:231 , ALA B:234 , GLY B:235 , SER B:238 , THR B:239 , GLN B:242 , ALA B:285 , PHE B:286 , ARG B:288 , GLY B:338 , PHE B:339 , GLY B:340 , HIS B:344 , CYS B:346 , GLY B:348 , ALA B:352 , HOH B:2066 , HOH B:2093
BINDING SITE FOR RESIDUE HEM B 450
04
AC4
SOFTWARE
LEU C:83 , LEU C:84 , HIS C:91 , ARG C:95 , PHE C:102 , ALA C:234 , GLY C:235 , SER C:238 , THR C:239 , PHE C:286 , ARG C:288 , GLY C:338 , PHE C:339 , GLY C:340 , HIS C:344 , CYS C:346 , GLY C:348 , ALA C:352 , LEU C:356 , HOH C:2073 , HOH C:2099
BINDING SITE FOR RESIDUE HEM C 450
05
AC5
SOFTWARE
LEU D:83 , LEU D:84 , HIS D:91 , ARG D:95 , ALA D:234 , GLY D:235 , SER D:238 , THR D:239 , GLN D:242 , ALA D:285 , PHE D:286 , ARG D:288 , GLY D:338 , PHE D:339 , GLY D:340 , HIS D:344 , CYS D:346 , GLY D:348 , ALA D:352 , HOH D:2069 , HOH D:2098
BINDING SITE FOR RESIDUE HEM D 450
06
AC6
SOFTWARE
LEU A:56 , GLY A:59 , PRO A:88 , VAL A:343 , HOH A:2027 , HOH A:2113 , ASP B:325
BINDING SITE FOR RESIDUE GOL A1398
07
AC7
SOFTWARE
GLY A:81 , GLY A:82 , LEU A:83 , LEU A:84 , GLY A:230 , VAL A:233
BINDING SITE FOR RESIDUE GOL A1399
08
AC8
SOFTWARE
ARG A:140 , THR A:240 , THR A:241 , GLY A:389 , PRO A:390 , LEU A:391 , HOH A:2065
BINDING SITE FOR RESIDUE GOL A1400
09
AC9
SOFTWARE
ARG A:253 , GLU A:255 , GLN A:259 , ILE A:327 , HOH A:2080 , HOH A:2100 , GLU B:292
BINDING SITE FOR RESIDUE GOL A1401
10
BC1
SOFTWARE
GLY A:342 , GLY B:21 , GLY B:24 , GLU B:25 , ASP B:325
BINDING SITE FOR RESIDUE GOL B1398
11
BC2
SOFTWARE
GLU B:5 , ARG B:34 , GLU B:305
BINDING SITE FOR RESIDUE SIN B1399
12
BC3
SOFTWARE
ASP A:325 , LEU B:56 , GLY B:57 , ASP B:58 , PRO B:88 , VAL B:343 , HOH B:2026 , HOH B:2102
BINDING SITE FOR RESIDUE GOL B1400
13
BC4
SOFTWARE
VAL B:135 , ARG B:140 , THR B:240 , THR B:241 , ALA B:244 , GLY B:389 , PRO B:390 , LEU B:391 , HOH B:2055
BINDING SITE FOR RESIDUE GOL B1401
14
BC5
SOFTWARE
LEU C:56 , GLY C:57 , GLY C:59 , PRO C:88 , VAL C:343 , HOH C:2022 , HOH C:2108 , ASP D:325
BINDING SITE FOR RESIDUE GOL C1398
15
BC6
SOFTWARE
ARG C:140 , THR C:240 , THR C:241 , ALA C:244 , GLY C:389 , PRO C:390 , LEU C:391 , HOH C:2062
BINDING SITE FOR RESIDUE GOL C1399
16
BC7
SOFTWARE
ARG C:253 , GLU C:255 , ILE C:327 , HOH C:2076 , HOH C:2095 , GLU D:292
BINDING SITE FOR RESIDUE GOL C1400
17
BC8
SOFTWARE
ASP C:325 , HOH C:2089 , HOH C:2092 , LEU D:56 , GLY D:59 , PHE D:61 , PRO D:88 , VAL D:343
BINDING SITE FOR RESIDUE GOL D1399
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:339-348,B:339-348,C:339-348,D:33...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
MYCG_MICGR
339-348
4
A:339-348
B:339-348
C:339-348
D:339-348
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2ygxa_ (A:)
1b: SCOP_d2ygxb_ (B:)
1c: SCOP_d2ygxc_ (C:)
1d: SCOP_d2ygxd_ (D:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Micromonospora griseorubida [TaxId: 28040]
(8)
1a
d2ygxa_
A:
1b
d2ygxb_
B:
1c
d2ygxc_
C:
1d
d2ygxd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (268 KB)
Header - Asym.Unit
Biol.Unit 1 (69 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
Biol.Unit 3 (69 KB)
Header - Biol.Unit 3
Biol.Unit 4 (69 KB)
Header - Biol.Unit 4
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