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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
2YGG
Asym. Unit
Info
Asym.Unit (85 KB)
Biol.Unit 1 (79 KB)
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(1)
Title
:
COMPLEX OF CAMBR AND CAM
Authors
:
S. Koester, O. Yildiz
Date
:
15 Apr 11 (Deposition) - 28 Sep 11 (Release) - 19 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.23
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Metal Binding Protein-Transport Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Koester, T. Pavkov-Keller, W. Kuehlbrandt, O. Yildiz
Structure Of Human Na+/H+ Exchanger Nhe1 Regulatory Region In Complex With Cam And Ca2+
J. Biol. Chem. V. 286 40954 2011
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4a: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMa)
4b: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMb)
4c: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
4
TAM
3
Ligand/Ion
TRIS(HYDROXYETHYL)AMINOMETHANE
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:630 , ILE A:631 , SER B:82 , GLU B:85 , MET B:146 , THR B:147 , HOH B:2059
BINDING SITE FOR RESIDUE MPD A1686
2
AC2
SOFTWARE
GLU A:629 , ARG A:632 , ARG A:645 , SER A:648 , TYR A:649 , HOH A:2045 , HOH A:2046 , LEU B:113 , HOH B:2038
BINDING SITE FOR RESIDUE TAM A1687
3
AC3
SOFTWARE
ASP B:94 , ASP B:96 , ASN B:98 , TYR B:100 , GLU B:105 , HOH B:2025
BINDING SITE FOR RESIDUE CA B1151
4
AC4
SOFTWARE
ASP B:57 , ASP B:59 , ASN B:61 , THR B:63 , GLU B:68 , HOH B:2007 , HOH B:2008
BINDING SITE FOR RESIDUE CA B1152
5
AC5
SOFTWARE
ASP B:21 , ASP B:23 , ASP B:25 , THR B:27 , GLU B:32 , HOH B:2002
BINDING SITE FOR RESIDUE CA B1153
6
AC6
SOFTWARE
ASP B:130 , ASP B:132 , ASP B:134 , GLN B:136 , GLU B:141 , HOH B:2053
BINDING SITE FOR RESIDUE CA B1154
7
AC7
SOFTWARE
LYS B:76 , THR B:80 , HOH B:2010
BINDING SITE FOR RESIDUE MRD B1155
8
AC8
SOFTWARE
ARG A:651 , HOH A:2032 , ASN B:138 , TYR B:139 , GLU B:140 , HOH B:2016
BINDING SITE FOR RESIDUE TAM B1156
9
AC9
SOFTWARE
LEU A:646 , GLU B:120 , ASP B:123 , GLU B:124 , HOH B:2069
BINDING SITE FOR RESIDUE TAM B1157
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050231 (N682K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050231
N
682
K
SL9A1_HUMAN
Polymorphism
35703140
A
N
682
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (B:8-43|B:44-79|B:81-116|B:117-149,...)
2: EF_HAND_1 (B:21-33|B:57-69|B:94-106|B:130-142...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM3_RAT
8-43
44-79
81-116
117-149
4
B:8-43
B:44-79
B:81-116
B:117-149
CALM1_RAT
8-43
44-79
81-116
117-149
4
B:8-43
B:44-79
B:81-116
B:117-149
CALM2_RAT
8-43
44-79
81-116
117-149
4
B:8-43
B:44-79
B:81-116
B:117-149
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM3_RAT
21-33
57-69
94-106
130-142
4
B:21-33
B:57-69
B:94-106
B:130-142
CALM1_RAT
21-33
57-69
94-106
130-142
4
B:21-33
B:57-69
B:94-106
B:130-142
CALM2_RAT
21-33
57-69
94-106
130-142
4
B:21-33
B:57-69
B:94-106
B:130-142
[
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]
Exons
(9, 9)
Info
All Exons
Exon 1.2 (B:5-12)
Exon 1.3 (B:12-60)
Exon 1.4 (B:60-95)
Exon 1.5 (B:96-141)
Exon 1.6 (B:141-149)
Exon 2.10 (A:620-621)
Exon 2.11 (A:622-645)
Exon 2.12 (A:646-679)
Exon 2.13 (A:680-685)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 2.9b/2.10
08: Boundary 2.10/2.11
09: Boundary 2.11/2.12
10: Boundary 2.12/2.13
11: Boundary 2.13/2.14b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000022603
1
ENSRNOE00000444589
chr1:
77252808-77252705
104
CALM3_RAT
1-1
1
0
-
-
1.2
ENSRNOT00000022603
2
ENSRNOE00000354112
chr1:
77248702-77248672
31
CALM3_RAT
2-12
11
1
B:5-12
8
1.3
ENSRNOT00000022603
3
ENSRNOE00000337344
chr1:
77246477-77246334
144
CALM3_RAT
12-60
49
1
B:12-60
49
1.4
ENSRNOT00000022603
4
ENSRNOE00000316778
chr1:
77246246-77246140
107
CALM3_RAT
60-95
36
1
B:60-95
36
1.5
ENSRNOT00000022603
5
ENSRNOE00000294358
chr1:
77246001-77245866
136
CALM3_RAT
96-141
46
1
B:96-141
46
1.6
ENSRNOT00000022603
6
ENSRNOE00000161097
chr1:
77245776-77245475
302
CALM3_RAT
141-149
9
1
B:141-149
9
1.7
ENSRNOT00000022603
7
ENSRNOE00000437380
chr1:
77244456-77244169
288
CALM3_RAT
-
0
0
-
-
2.3a
ENST00000263980
3a
ENSE00001322091
chr1:
27481401-27480474
928
SL9A1_HUMAN
1-118
118
0
-
-
2.4b
ENST00000263980
4b
ENSE00000956128
chr1:
27440777-27440317
461
SL9A1_HUMAN
118-271
154
0
-
-
2.5
ENST00000263980
5
ENSE00000902176
chr1:
27436268-27436018
251
SL9A1_HUMAN
272-355
84
0
-
-
2.6
ENST00000263980
6
ENSE00000956129
chr1:
27434356-27434139
218
SL9A1_HUMAN
355-428
74
0
-
-
2.7a
ENST00000263980
7a
ENSE00000956130
chr1:
27432578-27432376
203
SL9A1_HUMAN
428-495
68
0
-
-
2.8b
ENST00000263980
8b
ENSE00000760795
chr1:
27429803-27429714
90
SL9A1_HUMAN
496-525
30
0
-
-
2.9b
ENST00000263980
9b
ENSE00000760796
chr1:
27429234-27429164
71
SL9A1_HUMAN
526-549
24
0
-
-
2.10
ENST00000263980
10
ENSE00001614589
chr1:
27429049-27428876
174
SL9A1_HUMAN
549-607
59
1
A:620-621
2
2.11
ENST00000263980
11
ENSE00000760801
chr1:
27428621-27428507
115
SL9A1_HUMAN
607-645
39
1
A:622-645
24
2.12
ENST00000263980
12
ENSE00000760804
chr1:
27428317-27428216
102
SL9A1_HUMAN
646-679
34
1
A:646-679
34
2.13
ENST00000263980
13
ENSE00000760806
chr1:
27427766-27427694
73
SL9A1_HUMAN
680-704
25
1
A:680-685
6
2.14b
ENST00000263980
14b
ENSE00001462442
chr1:
27427135-27425306
1830
SL9A1_HUMAN
704-815
112
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2yggb_ (B:)
View:
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(
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Folds
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(15)
1a
d2yggb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Nucleic
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Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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