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2YG8
Biol. Unit 2
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Asym.Unit (81 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (39 KB)
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(1)
Title
:
STRUCTURE OF AN UNUSUAL 3-METHYLADENINE DNA GLYCOSYLASE II ( ALKA) FROM DEINOCOCCUS RADIODURANS
Authors
:
E. Moe, D. R. Hall, I. Leiros, V. Talstad, J. Timmins, S. Mcsweeney
Date
:
11 Apr 11 (Deposition) - 20 Apr 11 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Dna Repair
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. Moe, D. R. Hall, I. Leiros, V. T. Monsen, J. Timmins, S. Mcsweeney
Structure-Function Studies Of An Unusual 3-Methyladenine Dna Glycosylase Ii (Alka) From Deinococcus Radiodurans
Acta Crystallogr. , Sect. D V. 68 703 2012
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLYCEROL (GOLa)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
-1
Ligand/Ion
GLYCEROL
3
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:110 , SER B:112 , LYS B:115 , HOH B:2172
BINDING SITE FOR RESIDUE CL B1226
2
AC2
SOFTWARE
GLY B:155 , THR B:158
BINDING SITE FOR RESIDUE CL B1227
3
AC5
SOFTWARE
PRO A:40 , VAL A:41 , HOH A:2065 , HOH A:2077 , HOH A:2282 , HOH A:2327 , HOH A:2328 , ARG B:107 , SER B:112 , TRP B:113
BINDING SITE FOR RESIDUE GOL A1228
4
AC6
SOFTWARE
ALA B:126 , ILE B:131 , ASP B:132 , PHE B:133 , ALA B:134 , SER B:137 , GLY B:138 , HOH B:2186 , HOH B:2284 , HOH B:2285
BINDING SITE FOR RESIDUE MES B1228
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_HhH_GPD_2yg8B01 (B:66-204)
1b: PFAM_HhH_GPD_2yg8B02 (B:66-204)
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)
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)
Clan
:
HHH
(112)
Family
:
HhH-GPD
(47)
Deinococcus radiodurans
(2)
1a
HhH-GPD-2yg8B01
B:66-204
1b
HhH-GPD-2yg8B02
B:66-204
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Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (81 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Biol.Unit 2 (39 KB)
Header - Biol.Unit 2
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