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2YFR
Biol. Unit 1
Info
Asym.Unit (206 KB)
Biol.Unit 1 (199 KB)
Biol.Unit 2 (394 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF INULOSUCRASE FROM LACTOBACILLUS JOHNSONII NCC533
Authors
:
T. Pijning, M. A. Anwar, H. Leemhuis, S. Kralj, L. Dijkhuizen, B. W. Dijk
Date
:
07 Apr 11 (Deposition) - 03 Aug 11 (Release) - 31 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Fructosyltransferase, Glycoside Hydrolase Family Gh68, Transferase, Sugar Utilization
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Pijning, M. A. Anwar, M. Boger, J. M. Dobruchowska, H. Leemhuis, S. Kralj, L. Dijkhuizen, B. W. Dijkstra
Crystal Structure Of Inulosucrase From Lactobacillus: Insights Into The Substrate Specificity And Product Specificity Of Gh68 Fructansucrases.
J. Mol. Biol. V. 412 80 2011
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Hetero Components
(3, 21)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
GOL
9
Ligand/Ion
GLYCEROL
5
SO4
9
Ligand/Ion
SULFATE ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:419 , GLN A:450 , TRP A:487 , ASN A:489 , ASP A:521 , HOH A:2276
BINDING SITE FOR RESIDUE CA A1709
02
AC2
SOFTWARE
GLN A:338 , TYR A:355 , LYS A:357
BINDING SITE FOR RESIDUE CL A1710
03
AC3
SOFTWARE
LYS A:250 , ASN A:320 , SO4 A:1721 , HOH A:2497
BINDING SITE FOR RESIDUE ACT A1711
04
AC4
SOFTWARE
ASP A:500 , ASN A:503 , HOH A:2336
BINDING SITE FOR RESIDUE ACT A1712
05
AC5
SOFTWARE
ARG A:545
BINDING SITE FOR RESIDUE ACT A1713
06
AC6
SOFTWARE
GLU A:625 , LYS A:629 , GLY A:630 , HIS A:632 , HOH A:2088 , HOH A:2498
BINDING SITE FOR RESIDUE SO4 A1714
07
AC7
SOFTWARE
LYS A:264 , VAL A:265 , HOH A:2079 , HOH A:2499 , HOH A:2501
BINDING SITE FOR RESIDUE SO4 A1715
08
AC8
SOFTWARE
ASN A:364 , HIS A:390 , ASP A:392 , LYS A:678 , PRO A:687 , GLY A:688 , HOH A:2240 , HOH A:2502 , HOH A:2503
BINDING SITE FOR RESIDUE SO4 A1716
09
AC9
SOFTWARE
TYR A:376 , ASP A:392 , ASN A:393 , LYS A:502 , HOH A:2470
BINDING SITE FOR RESIDUE SO4 A1717
10
BC1
SOFTWARE
ASP A:318 , ASN A:320 , HIS A:321
BINDING SITE FOR RESIDUE SO4 A1718
11
BC2
SOFTWARE
LYS A:248 , ASN A:669 , ASP A:671 , SO4 A:1721 , HOH A:2504
BINDING SITE FOR RESIDUE SO4 A1719
12
BC3
SOFTWARE
SER A:211 , LYS A:212 , GLU A:213
BINDING SITE FOR RESIDUE SO4 A1720
13
BC4
SOFTWARE
SER A:247 , LYS A:248 , GLU A:380 , ASP A:382 , ACT A:1711 , SO4 A:1719 , HOH A:2051 , HOH A:2505 , HOH A:2506 , HOH A:2507
BINDING SITE FOR RESIDUE SO4 A1721
14
BC5
SOFTWARE
ARG A:238 , HOH A:2508
BINDING SITE FOR RESIDUE SO4 A1722
15
BC6
SOFTWARE
ASP A:272 , TRP A:339 , SER A:340 , ARG A:424 , ASP A:425 , GLU A:441 , GLU A:524 , GOL A:1730 , GOL A:1731
BINDING SITE FOR RESIDUE GOL A1723
16
BC7
SOFTWARE
ASP A:480 , ARG A:484 , MET A:553 , ASN A:556 , LYS A:557 , ASP A:695 , LEU A:698
BINDING SITE FOR RESIDUE GOL A1724
17
BC8
SOFTWARE
ARG A:610 , LYS A:654 , TRP A:663 , HOH A:2447 , HOH A:2509
BINDING SITE FOR RESIDUE GOL A1725
18
BC9
SOFTWARE
ASP A:431 , ASP A:432 , TYR A:535 , LEU A:573 , HOH A:2510
BINDING SITE FOR RESIDUE GOL A1726
19
CC1
SOFTWARE
ASP A:318 , ASN A:657 , HOH A:2511 , HOH A:2512
BINDING SITE FOR RESIDUE GOL A1727
20
CC2
SOFTWARE
ASN A:556 , LYS A:557 , ALA A:558 , VAL A:559 , GLY A:560 , PRO A:592 , VAL A:694 , LEU A:698 , ILE A:699 , GLY A:700 , GLY A:701 , TYR A:702 , ASN A:703 , LEU A:704
BINDING SITE FOR RESIDUE GOL A1728
21
CC3
SOFTWARE
LYS A:534 , VAL A:569 , SER A:570 , ASP A:571 , ASN A:647 , HOH A:2513 , HOH A:2514
BINDING SITE FOR RESIDUE GOL A1729
22
CC4
SOFTWARE
TRP A:271 , MET A:296 , ASN A:305 , ARG A:623 , GOL A:1723
BINDING SITE FOR RESIDUE GOL A1730
23
CC5
SOFTWARE
ASP A:272 , GLU A:524 , ARG A:542 , TYR A:600 , SER A:601 , TYR A:619 , ARG A:623 , GOL A:1723
BINDING SITE FOR RESIDUE GOL A1731
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (206 KB)
Header - Asym.Unit
Biol.Unit 1 (199 KB)
Header - Biol.Unit 1
Biol.Unit 2 (394 KB)
Header - Biol.Unit 2
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