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2YFQ
Asym. Unit
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Asym.Unit (271 KB)
Biol.Unit 1 (781 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUTAMATE DEHYDROGENASE FROM PEPTONIPHILUS ASACCHAROLYTICUS
Authors
:
T. Oliveira, S. Panjikar, J. B. Carrigan, M. A. Sharkey, M. Hamza, P. C. E A. R. Khan
Date
:
07 Apr 11 (Deposition) - 23 Nov 11 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.94
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Oliveira, S. Panjikar, J. B. Carrigan, M. Hamza, P. C. Engel, A. R. Khan
Crystal Structure Of Nad-Dependent Peptoniphilus Asaccharolyticus Glutamate Dehydrogenase Reveals Determinants Of Cofactor Specificity.
J. Struct. Biol. V. 177 543 2012
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
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No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:70 , GLY A:71 , MET A:91 , ALA A:144 , VAL A:352 , SER A:355
BINDING SITE FOR RESIDUE SO4 A1422
2
AC2
SOFTWARE
PRO A:178 , VAL A:179 , ARG A:187
BINDING SITE FOR RESIDUE SO4 A1423
3
AC3
SOFTWARE
VAL B:179 , ARG B:187
BINDING SITE FOR RESIDUE SO4 B1422
4
AC4
SOFTWARE
LYS B:70 , GLY B:71 , MET B:91 , ALA B:144 , VAL B:352 , SER B:355
BINDING SITE FOR RESIDUE SO4 B1423
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
Info
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1: GLFV_DEHYDROGENASE (A:100-113,B:100-113)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLFV_DEHYDROGENASE
PS00074
Glu / Leu / Phe / Val dehydrogenases active site.
DHE2_PEPAS
100-113
2
A:100-113
B:100-113
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2yfqa1 (A:6-180)
1b: SCOP_d2yfqb1 (B:5-180)
2a: SCOP_d2yfqa2 (A:181-421)
2b: SCOP_d2yfqb2 (B:181-421)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Peptoniphilus asaccharolyticus [TaxId: 1258]
(1)
1a
d2yfqa1
A:6-180
1b
d2yfqb1
B:5-180
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Peptoniphilus asaccharolyticus [TaxId: 1258]
(1)
2a
d2yfqa2
A:181-421
2b
d2yfqb2
B:181-421
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (271 KB)
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