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2YF2
Asym. Unit
Info
Asym.Unit (70 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE OLIGOMERISATION DOMAIN OF C4B-BINDING PROTEIN FROM GALLUS GALLUS
Authors
:
J. J. E. Caesar, F. Hill, S. M. Lea
Date
:
01 Apr 11 (Deposition) - 18 Apr 12 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.24
Chains
:
Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B,C,D,E,F,G (1x)
Keywords
:
Immune System, Complement System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. E. Caesar, F. Hill, S. M. Lea
Crystal Structure Of The Oligomerisation Domain Of C4B-Binding Protein From Gallus Gallus
To Be Published
[
close entry info
]
Hetero Components
(2, 30)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
11
Ligand/Ion
ACETATE ION
2
EDO
19
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS C:433 , LYS D:433 , GLU D:437 , EDO D:1449
BINDING SITE FOR RESIDUE EDO D1448
02
AC2
SOFTWARE
GLU C:430 , GLU D:430 , EDO D:1448
BINDING SITE FOR RESIDUE EDO D1449
03
AC3
SOFTWARE
GLU F:430 , GLU G:430 , LEU G:434 , HOH G:2008
BINDING SITE FOR RESIDUE EDO G1460
04
AC4
SOFTWARE
LYS E:433 , GLU F:430 , LYS F:433 , LEU F:434 , GLU F:437 , HOH F:2012
BINDING SITE FOR RESIDUE EDO F1448
05
AC5
SOFTWARE
GLN A:412 , THR A:422 , ASP B:424 , EDO B:1450 , PRO D:421
BINDING SITE FOR RESIDUE EDO B1447
06
AC6
SOFTWARE
GLU A:430 , GLU B:430 , LEU B:434 , HOH B:2008
BINDING SITE FOR RESIDUE EDO B1448
07
AC7
SOFTWARE
GLN B:412 , SER B:416 , THR B:422 , EDO B:1451 , ACT B:1454 , HIS C:419
BINDING SITE FOR RESIDUE EDO B1449
08
AC8
SOFTWARE
GLU B:423 , EDO B:1451 , EDO B:1452 , GLU C:423 , ASP C:424 , THR C:427 , EDO C:1461 , HOH C:2006
BINDING SITE FOR RESIDUE EDO C1460
09
AC9
SOFTWARE
GLU G:444
BINDING SITE FOR RESIDUE EDO G1461
10
BC1
SOFTWARE
LYS F:440 , GLU G:437 , LYS G:440 , LEU G:441 , GLU G:444
BINDING SITE FOR RESIDUE EDO G1462
11
BC2
SOFTWARE
GLU A:423 , GLU B:423 , ASP B:424 , THR B:427 , EDO B:1447 , HOH B:2012 , GLU D:423
BINDING SITE FOR RESIDUE EDO B1450
12
BC3
SOFTWARE
LYS E:426 , GLU F:423 , LYS F:426 , THR F:427 , GLU F:430
BINDING SITE FOR RESIDUE EDO F1449
13
BC4
SOFTWARE
PRO E:421 , THR E:422 , PRO G:421 , THR G:422 , ACT G:1464 , HOH G:2009
BINDING SITE FOR RESIDUE EDO G1463
14
BC5
SOFTWARE
GLU A:423 , ASP A:424 , THR A:427 , GLU E:423 , HOH E:2005 , GLU G:423 , ACT G:1464
BINDING SITE FOR RESIDUE EDO A1459
15
BC6
SOFTWARE
GLN B:412 , THR B:422 , EDO B:1449 , EDO B:1452 , PRO C:421 , ASP C:424 , LEU C:428 , EDO C:1460
BINDING SITE FOR RESIDUE EDO B1451
16
BC7
SOFTWARE
ASP G:424
BINDING SITE FOR RESIDUE EDO F1450
17
BC8
SOFTWARE
LYS B:426 , GLU C:423 , LYS C:426 , THR C:427 , GLU C:430 , EDO C:1460
BINDING SITE FOR RESIDUE EDO C1461
18
BC9
SOFTWARE
PRO B:421 , THR B:422 , GLU B:423 , EDO B:1452 , ACT B:1454 , THR C:422 , GLU C:423 , ACT C:1463 , HOH C:2013 , THR D:427
BINDING SITE FOR RESIDUE EDO C1462
19
CC1
SOFTWARE
THR B:422 , GLU B:423 , EDO B:1451 , ACT B:1454 , PRO C:421 , THR C:422 , GLU C:423 , THR C:427 , EDO C:1460 , EDO C:1462
BINDING SITE FOR RESIDUE EDO B1452
20
CC2
SOFTWARE
LEU C:457 , GLY C:459 , GLU D:407 , ARG E:432 , LYS F:442
BINDING SITE FOR RESIDUE ACT E1459
21
CC3
SOFTWARE
VAL D:404 , ARG F:432 , PHE F:435
BINDING SITE FOR RESIDUE ACT F1451
22
CC4
SOFTWARE
GLU A:407 , ARG B:432 , LYS C:442
BINDING SITE FOR RESIDUE ACT B1453
23
CC5
SOFTWARE
VAL B:404 , ILE D:431 , ARG D:432 , PHE D:435
BINDING SITE FOR RESIDUE ACT D1450
24
CC6
SOFTWARE
PRO B:421 , GLN C:412 , THR C:422 , EDO C:1462 , ASP D:424 , LEU D:428
BINDING SITE FOR RESIDUE ACT C1463
25
CC7
SOFTWARE
PRO A:421 , THR A:422 , PRO D:421 , THR D:422 , HOH D:2011
BINDING SITE FOR RESIDUE ACT D1451
26
CC8
SOFTWARE
ARG A:432 , PHE A:435 , VAL F:404
BINDING SITE FOR RESIDUE ACT A1460
27
CC9
SOFTWARE
PRO B:421 , THR B:422 , EDO B:1449 , EDO B:1452 , PRO C:421 , THR C:422 , EDO C:1462
BINDING SITE FOR RESIDUE ACT B1454
28
DC1
SOFTWARE
GLN E:412 , THR E:422 , ASP F:424 , LEU F:428 , PRO G:421
BINDING SITE FOR RESIDUE ACT E1460
29
DC2
SOFTWARE
LYS B:426 , GLU B:430
BINDING SITE FOR RESIDUE ACT B1455
30
DC3
SOFTWARE
ASP A:424 , LEU A:428 , EDO A:1459 , PRO E:421 , GLN G:412 , THR G:422 , EDO G:1463
BINDING SITE FOR RESIDUE ACT G1464
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
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Chain A
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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