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Biol. Unit 1
Info
Asym.Unit (133 KB)
Biol.Unit 1 (87 KB)
Biol.Unit 2 (81 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD2 WITH THE INHIBITOR GSK525762 (IBET)
Authors
:
C. W. Chung
Date
:
25 Mar 11 (Deposition) - 15 Jun 11 (Release) - 21 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Signaling Protein, Histone, Epigenetic Reader
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. W. Chung, H. Coste, J. H. White, O. Mirguet, J. Wilde, R. L. Gosmini, C. Delves, S. M. Magny, R. Woodward, S. A. Hughes, E. V. Boursier, H. Flynn, A. M. Bouillot, P. Bamborough, J. M. Brusq, F. J. Gellibert, E. J. Jones, A. M. Riou, P. Homes, S. L. Martin, I. J. Uings, J. Toum, C. A. Clement, A. B. Boullay, R. L. Grimley, F. M. Blandel, R. K. Prinjha K. Lee, J. Kirilovsky, E. Nicodeme
Discovery And Characterization Of Small Molecule Inhibitors Of The Bet Family Bromodomains.
J. Med. Chem. V. 54 3827 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 2-[(4S)-6-(4-CHLOROPHENYL)-8-METHO... (EAMa)
1b: 2-[(4S)-6-(4-CHLOROPHENYL)-8-METHO... (EAMb)
1c: 2-[(4S)-6-(4-CHLOROPHENYL)-8-METHO... (EAMc)
2a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
EAM
2
Ligand/Ion
2-[(4S)-6-(4-CHLOROPHENYL)-8-METHOXY-1-METHYL-4H-[1,2,4]TRIAZOLO[4,3-A][1,4]BENZODIAZEPIN-4-YL]-N-ETHYLACETAMIDE
2
SO4
-1
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:97 , PRO A:98 , VAL A:103 , LEU A:110 , ASN A:156 , ILE A:162 , HOH A:2053 , HOH A:2070 , HOH A:2119 , HOH A:2120 , GLN B:94
BINDING SITE FOR RESIDUE EAM A1188
2
AC2
SOFTWARE
GLN A:94 , TRP B:97 , PRO B:98 , LEU B:110 , ASN B:156 , ILE B:162 , HOH B:2049 , HOH B:2100 , HOH B:2101 , HOH B:2126
BINDING SITE FOR RESIDUE EAM B1183
3
AC3
SOFTWARE
ARG B:100 , HOH B:2010 , ARG C:128 , ASN C:132 , TYR C:134 , HOH C:2115 , HOH C:2116
BINDING SITE FOR RESIDUE SO4 C1182
4
AC4
SOFTWARE
GLN A:80 , PRO A:181 , TRP C:97 , PRO C:98 , VAL C:103 , LEU C:110 , ASN C:156 , ASP C:161 , ILE C:162 , HOH C:2037 , HOH C:2047 , HOH C:2098 , HOH C:2099
BINDING SITE FOR RESIDUE EAM C1183
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: BROMODOMAIN_2 (A:91-163,B:91-163)
2: BROMODOMAIN_1 (A:96-155,B:96-155)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BROMODOMAIN_2
PS50014
Bromodomain profile.
BRD2_HUMAN
91-163
364-436
2
A:91-163
B:91-163
-
-
2
BROMODOMAIN_1
PS00633
Bromodomain signature.
BRD2_HUMAN
96-155
369-428
2
A:96-155
B:96-155
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2yeka_ (A:)
1b: SCOP_d2yekb_ (B:)
1c: SCOP_d2yekc_ (C:)
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Classes
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)
(
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(
)
Protein Domains
(
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(
)
Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
automated matches
(169)
Protein domain
:
automated matches
(169)
Human (Homo sapiens) [TaxId: 9606]
(162)
1a
d2yeka_
A:
1b
d2yekb_
B:
1c
d2yekc_
C:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Bromodomain_2yekC01 (C:84-168)
1b: PFAM_Bromodomain_2yekC02 (C:84-168)
1c: PFAM_Bromodomain_2yekC03 (C:84-168)
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Clans
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(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Bromodomain]
(56)
Family
:
Bromodomain
(56)
Homo sapiens (Human)
(44)
1a
Bromodomain-2yekC01
C:84-168
1b
Bromodomain-2yekC02
C:84-168
1c
Bromodomain-2yekC03
C:84-168
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Asym.Unit (133 KB)
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