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Getting 'Exon' information from database.
2YDS
Asym. Unit
Info
Asym.Unit (106 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
CPOGA D298N IN COMPLEX WITH TAB1-DERIVED O-GLCNAC PEPTIDE
Authors
:
M. Schimpl, V. S. Borodkin, L. J. Gray, D. M. F. Van Aalten
Date
:
24 Mar 11 (Deposition) - 14 Mar 12 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,T
Biol. Unit 1: A,T (1x)
Keywords
:
Hydrolase-Peptide Complex, Metal Binding, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Schimpl, V. S. Borodkin, L. J. Gray, D. M. F. Van Aalten
Synergy Of Peptide And Sugar In O-Glcnacase Substrate Recognition.
Chem. Biol. V. 19 173 2012
[
close entry info
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
1n: CADMIUM ION (CDn)
1o: CADMIUM ION (CDo)
1p: CADMIUM ION (CDp)
1q: CADMIUM ION (CDq)
1r: CADMIUM ION (CDr)
1s: CADMIUM ION (CDs)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
19
Ligand/Ion
CADMIUM ION
2
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:51 , ASN A:450 , ASP A:452 , HOH A:2004
BINDING SITE FOR RESIDUE CD A1619
02
AC2
SOFTWARE
GLU A:54 , ASP A:266 , LYS A:306
BINDING SITE FOR RESIDUE CD A1620
03
AC3
SOFTWARE
ASP A:58 , GLU A:272 , HOH A:2001 , HOH A:2059
BINDING SITE FOR RESIDUE CD A1621
04
AC4
SOFTWARE
LEU A:68 , GLU A:71 , GLU A:72 , HOH A:2009
BINDING SITE FOR RESIDUE CD A1622
05
AC5
SOFTWARE
GLU A:73 , GLU A:108 , ASP A:111 , HOH A:2019
BINDING SITE FOR RESIDUE CD A1623
06
AC6
SOFTWARE
ASP A:112 , GLU A:550 , HOH A:2020 , HOH A:2021
BINDING SITE FOR RESIDUE CD A1624
07
AC7
SOFTWARE
ASP A:117 , GLU A:145 , GLU A:545
BINDING SITE FOR RESIDUE CD A1625
08
AC8
SOFTWARE
ASN A:138 , ASP A:139 , ASP A:268 , HOH A:2056
BINDING SITE FOR RESIDUE CD A1626
09
AC9
SOFTWARE
ASP A:252
BINDING SITE FOR RESIDUE CD A1627
10
BC1
SOFTWARE
GLU A:170 , HOH A:2007 , HOH A:2026 , HOH A:2027 , HOH A:2033
BINDING SITE FOR RESIDUE CD A1628
11
BC2
SOFTWARE
GLU A:272 , HIS A:276 , HOH A:2058
BINDING SITE FOR RESIDUE CD A1629
12
BC3
SOFTWARE
GLU A:282 , ASP A:286 , GLU A:588 , HOH A:2062 , HOH A:2063
BINDING SITE FOR RESIDUE CD A1630
13
BC4
SOFTWARE
GLU A:362 , ASP A:424
BINDING SITE FOR RESIDUE CD A1631
14
BC5
SOFTWARE
ASP A:388
BINDING SITE FOR RESIDUE CD A1632
15
BC6
SOFTWARE
LYS A:404 , HIS A:433 , HOH A:2083 , HOH A:2091
BINDING SITE FOR RESIDUE CD A1633
16
BC7
SOFTWARE
HIS A:413
BINDING SITE FOR RESIDUE CD A1634
17
BC8
SOFTWARE
ASP A:474 , ARG A:531 , GLU A:534 , HOH A:2042 , HOH A:2106
BINDING SITE FOR RESIDUE CD A1635
18
BC9
SOFTWARE
ASP A:457 , HOH A:2100
BINDING SITE FOR RESIDUE CD A1636
19
CC1
SOFTWARE
ASP A:117 , GLU A:545 , GLU A:549
BINDING SITE FOR RESIDUE CD A1637
20
CC2
SOFTWARE
GLY A:187 , PHE A:188 , LYS A:218 , ASP A:297 , TYR A:335 , THR A:366 , VAL A:370 , TRP A:394 , ASN A:396 , ASP A:401 , ASN A:429 , TYR T:394 , SER T:395
BINDING SITE FOR MONO-SACCHARIDE NAG A1618 BOUND TO SER T 395
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(1, 1)
Info
All Exons
Exon 1.11b (T:392-396)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.10/1.11b
2: Boundary 1.11b/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000216160
1a
ENSE00001313059
chr22:
39795746-39795840
95
TAB1_HUMAN
1-11
11
0
-
-
1.3d
ENST00000216160
3d
ENSE00000880355
chr22:
39811011-39811147
137
TAB1_HUMAN
12-57
46
0
-
-
1.4a
ENST00000216160
4a
ENSE00000654725
chr22:
39811505-39811658
154
TAB1_HUMAN
57-108
52
0
-
-
1.5e
ENST00000216160
5e
ENSE00000654726
chr22:
39812796-39812882
87
TAB1_HUMAN
109-137
29
0
-
-
1.6b
ENST00000216160
6b
ENSE00000654728
chr22:
39813716-39813854
139
TAB1_HUMAN
138-184
47
0
-
-
1.7b
ENST00000216160
7b
ENSE00000654729
chr22:
39814737-39814850
114
TAB1_HUMAN
184-222
39
0
-
-
1.8
ENST00000216160
8
ENSE00000654730
chr22:
39815524-39815635
112
TAB1_HUMAN
222-259
38
0
-
-
1.9c
ENST00000216160
9c
ENSE00000654731
chr22:
39817832-39817976
145
TAB1_HUMAN
259-307
49
0
-
-
1.10
ENST00000216160
10
ENSE00000654732
chr22:
39822708-39822930
223
TAB1_HUMAN
308-382
75
0
-
-
1.11b
ENST00000216160
11b
ENSE00000654734
chr22:
39824026-39824188
163
TAB1_HUMAN
382-436
55
1
T:392-396
5
1.12
ENST00000216160
12
ENSE00001109364
chr22:
39826020-39827887
1868
TAB1_HUMAN
436-504
69
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
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Chain A
Chain T
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (106 KB)
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