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2YDQ
Asym. Unit
Info
Asym.Unit (106 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
CPOGA D298N IN COMPLEX WITH HOGA-DERIVED O-GLCNAC PEPTIDE
Authors
:
M. Schimpl, V. S. Borodkin, L. J. Gray, D. M. F. Van Aalten
Date
:
24 Mar 11 (Deposition) - 14 Mar 12 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,T
Biol. Unit 1: A,T (1x)
Keywords
:
Hydrolase-Peptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Schimpl, V. S. Borodkin, L. J. Gray, D. M. F. Van Aalten
Synergy Of Peptide And Sugar In O-Glcnacase Substrate Recognition.
Chem. Biol. V. 19 173 2012
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
1n: CADMIUM ION (CDn)
1o: CADMIUM ION (CDo)
1p: CADMIUM ION (CDp)
1q: CADMIUM ION (CDq)
1r: CADMIUM ION (CDr)
1s: CADMIUM ION (CDs)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
19
Ligand/Ion
CADMIUM ION
2
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:117 , GLU A:145 , GLU A:545 , HOH A:2022 , HOH A:2025
BINDING SITE FOR RESIDUE CD A1620
02
AC2
SOFTWARE
ASP A:139 , ASP A:268 , HOH A:2031 , HOH A:2055
BINDING SITE FOR RESIDUE CD A1621
03
AC3
SOFTWARE
GLU A:282 , ASP A:286 , GLU A:588 , HOH A:2059 , HOH A:2101
BINDING SITE FOR RESIDUE CD A1622
04
AC4
SOFTWARE
ASP A:58 , GLU A:272 , HOH A:2007 , HOH A:2008
BINDING SITE FOR RESIDUE CD A1623
05
AC5
SOFTWARE
GLU A:54 , ASP A:266 , LYS A:306
BINDING SITE FOR RESIDUE CD A1624
06
AC6
SOFTWARE
ASP A:112 , GLU A:550 , HOH A:2020 , HOH A:2097 , HOH A:2098
BINDING SITE FOR RESIDUE CD A1625
07
AC7
SOFTWARE
GLU A:271 , ARG A:313 , GLU A:581
BINDING SITE FOR RESIDUE CD A1626
08
AC8
SOFTWARE
LEU A:68 , GLU A:71 , HOH A:2012 , HOH A:2014
BINDING SITE FOR RESIDUE CD A1627
09
AC9
SOFTWARE
GLU A:73 , GLU A:108 , ASP A:111 , HOH A:2015 , HOH A:2019
BINDING SITE FOR RESIDUE CD A1628
10
BC1
SOFTWARE
ASP A:150 , ASP A:252 , HOH A:2032 , HOH A:2033
BINDING SITE FOR RESIDUE CD A1629
11
BC2
SOFTWARE
GLU A:170 , HOH A:2010 , HOH A:2011 , HOH A:2030
BINDING SITE FOR RESIDUE CD A1630
12
BC3
SOFTWARE
GLU A:362 , ASP A:424 , HOH A:2073 , HOH A:2081
BINDING SITE FOR RESIDUE CD A1631
13
BC4
SOFTWARE
GLU A:51 , ASN A:450 , ASP A:452 , HOH A:2086
BINDING SITE FOR RESIDUE CD A1632
14
BC5
SOFTWARE
ASP A:474 , ARG A:531 , GLU A:534
BINDING SITE FOR RESIDUE CD A1633
15
BC6
SOFTWARE
GLU A:272 , HIS A:276
BINDING SITE FOR RESIDUE CD A1634
16
BC7
SOFTWARE
HIS A:413
BINDING SITE FOR RESIDUE CD A1635
17
BC8
SOFTWARE
LYS A:404 , HIS A:433 , HOH A:2075
BINDING SITE FOR RESIDUE CD A1636
18
BC9
SOFTWARE
ASP A:117 , GLU A:545 , GLU A:549
BINDING SITE FOR RESIDUE CD A1637
19
CC1
SOFTWARE
HIS T:404
BINDING SITE FOR RESIDUE CD T1409
20
CC2
SOFTWARE
GLY A:187 , PHE A:188 , TYR A:189 , LYS A:218 , ASP A:297 , ASN A:298 , TYR A:335 , THR A:366 , VAL A:370 , TRP A:394 , ASN A:396 , ASP A:401 , ASN A:429 , SER T:405
BINDING SITE FOR MONO-SACCHARIDE NAG T 500 BOUND TO SER T 405
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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Atom Selection
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (106 KB)
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