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Getting 'Exon' information from database.
2YD6
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (157 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE DELTA
Authors
:
C. H. Coles, Y. Shen, A. P. Tenney, C. Siebold, G. C. Sutton, W. Lu, J. T. Ga E. Y. Jones, J. G. Flanagan, A. R. Aricescu
Date
:
17 Mar 11 (Deposition) - 13 Apr 11 (Release) - 04 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. H. Coles, Y. Shen, A. P. Tenney, C. Siebold, G. C. Sutton, W. Lu, J. T. Gallagher, E. Y. Jones, J. G. Flanagan, A. R. Aricescu
Proteoglycan-Specific Molecular Switch For Rptp Sigma Clustering And Neuronal Extension.
Science V. 332 484 2011
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: CITRATE ANION (FLCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
FLC
1
Ligand/Ion
CITRATE ANION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:30 , VAL A:31 , ILE A:44 , HOH A:2011 , HOH A:2015
BINDING SITE FOR RESIDUE CL A1222
2
AC2
SOFTWARE
ASN A:66 , GLN A:67 , ARG A:68 , ARG A:88 , ARG A:91 , THR A:140 , HOH A:2254
BINDING SITE FOR RESIDUE FLC A1223
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035645 (R28Q, chain A, )
2: VAR_PTPRD_HUMAN_CCDS6472_1_01 (R28Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035645
R
28
Q
PTPRD_HUMAN
Unclassified
---
A
R
28
Q
2
CancerSNP
VAR_PTPRD_HUMAN_CCDS6472_1_01
*
R
28
Q
PTPRD_HUMAN
Disease (Colorectal cancer)
---
A
R
28
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(8, 8)
Info
All Exons
Exon 1.10b (A:21-22)
Exon 1.11 (A:22-70)
Exon 1.12c (A:71-118)
Exon 1.13 (A:118-181 (gaps))
Exon 1.15 (A:181-184)
Exon 1.16 (A:184-184)
Exon 1.17b (A:185-221)
Exon 1.18 (A:221-221)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8/1.10b
2: Boundary 1.10b/1.11
3: Boundary 1.11/1.12c
4: Boundary 1.12c/1.13
5: Boundary 1.13/1.15
6: Boundary 1.15/1.16
7: Boundary 1.16/1.17b
8: Boundary 1.17b/1.18
9: Boundary 1.18/1.19b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000381196
1
ENSE00001811856
chr9:
9938610-9938507
104
PTPRD_HUMAN
-
0
0
-
-
1.2
ENST00000381196
2
ENSE00001948254
chr9:
9766851-9766810
42
PTPRD_HUMAN
-
0
0
-
-
1.3
ENST00000381196
3
ENSE00001955782
chr9:
9734571-9734533
39
PTPRD_HUMAN
-
0
0
-
-
1.4
ENST00000381196
4
ENSE00001889688
chr9:
9574781-9574732
50
PTPRD_HUMAN
-
0
0
-
-
1.6
ENST00000381196
6
ENSE00001817715
chr9:
9397482-9397449
34
PTPRD_HUMAN
-
0
0
-
-
1.7
ENST00000381196
7
ENSE00001940698
chr9:
9183363-9183304
60
PTPRD_HUMAN
-
0
0
-
-
1.8
ENST00000381196
8
ENSE00001487965
chr9:
9018735-9018697
39
PTPRD_HUMAN
-
0
0
-
-
1.10b
ENST00000381196
10b
ENSE00001254389
chr9:
8733946-8733780
167
PTPRD_HUMAN
1-22
22
1
A:21-22
2
1.11
ENST00000381196
11
ENSE00001172744
chr9:
8636844-8636699
146
PTPRD_HUMAN
22-70
49
1
A:22-70
49
1.12c
ENST00000381196
12c
ENSE00001172741
chr9:
8633458-8633317
142
PTPRD_HUMAN
71-118
48
1
A:71-118
48
1.13
ENST00000381196
13
ENSE00001172738
chr9:
8528779-8528591
189
PTPRD_HUMAN
118-181
64
1
A:118-181 (gaps)
64
1.15
ENST00000381196
15
ENSE00001780939
chr9:
8527353-8527345
9
PTPRD_HUMAN
181-184
4
1
A:181-184
4
1.16
ENST00000381196
16
ENSE00001739974
chr9:
8526644-8526627
18
PTPRD_HUMAN
184-190
7
1
A:184-184
1
1.17b
ENST00000381196
17b
ENSE00001087346
chr9:
8525035-8524925
111
PTPRD_HUMAN
190-227
38
1
A:185-221
37
1.18
ENST00000381196
18
ENSE00001662513
chr9:
8523524-8523513
12
PTPRD_HUMAN
227-231
5
1
A:221-221
1
1.19b
ENST00000381196
19b
ENSE00001087338
chr9:
8521546-8521277
270
PTPRD_HUMAN
231-321
91
0
-
-
1.20
ENST00000381196
20
ENSE00001012020
chr9:
8518429-8517848
582
PTPRD_HUMAN
321-515
195
0
-
-
1.21
ENST00000381196
21
ENSE00001172713
chr9:
8507434-8507301
134
PTPRD_HUMAN
515-559
45
0
-
-
1.22a
ENST00000381196
22a
ENSE00001368106
chr9:
8504405-8504261
145
PTPRD_HUMAN
560-608
49
0
-
-
1.23
ENST00000381196
23
ENSE00001012029
chr9:
8501059-8500754
306
PTPRD_HUMAN
608-710
103
0
-
-
1.24
ENST00000381196
24
ENSE00001012019
chr9:
8499840-8499647
194
PTPRD_HUMAN
710-774
65
0
-
-
1.25
ENST00000381196
25
ENSE00001172700
chr9:
8497268-8497242
27
PTPRD_HUMAN
775-783
9
0
-
-
1.26
ENST00000381196
26
ENSE00001012012
chr9:
8492979-8492862
118
PTPRD_HUMAN
784-823
40
0
-
-
1.27b
ENST00000381196
27b
ENSE00001012016
chr9:
8486349-8485762
588
PTPRD_HUMAN
823-1019
197
0
-
-
1.28b
ENST00000381196
28b
ENSE00001012033
chr9:
8485324-8485227
98
PTPRD_HUMAN
1019-1051
33
0
-
-
1.29b
ENST00000381196
29b
ENSE00001012014
chr9:
8484378-8484119
260
PTPRD_HUMAN
1052-1138
87
0
-
-
1.30
ENST00000381196
30
ENSE00001172680
chr9:
8471085-8470995
91
PTPRD_HUMAN
1138-1168
31
0
-
-
1.31
ENST00000381196
31
ENSE00001012036
chr9:
8465675-8465466
210
PTPRD_HUMAN
1169-1238
70
0
-
-
1.32
ENST00000381196
32
ENSE00001012037
chr9:
8460571-8460411
161
PTPRD_HUMAN
1239-1292
54
0
-
-
1.34
ENST00000381196
34
ENSE00001172661
chr9:
8449837-8449725
113
PTPRD_HUMAN
1292-1330
39
0
-
-
1.36
ENST00000381196
36
ENSE00001172655
chr9:
8436689-8436592
98
PTPRD_HUMAN
1330-1362
33
0
-
-
1.37
ENST00000381196
37
ENSE00001012032
chr9:
8404660-8404537
124
PTPRD_HUMAN
1363-1404
42
0
-
-
1.38
ENST00000381196
38
ENSE00001172638
chr9:
8389407-8389232
176
PTPRD_HUMAN
1404-1462
59
0
-
-
1.39
ENST00000381196
39
ENSE00001012031
chr9:
8376726-8376607
120
PTPRD_HUMAN
1463-1502
40
0
-
-
1.40
ENST00000381196
40
ENSE00001012034
chr9:
8376090-8375936
155
PTPRD_HUMAN
1503-1554
52
0
-
-
1.41
ENST00000381196
41
ENSE00001172619
chr9:
8341978-8341693
286
PTPRD_HUMAN
1554-1649
96
0
-
-
1.42
ENST00000381196
42
ENSE00001172611
chr9:
8341268-8341090
179
PTPRD_HUMAN
1650-1709
60
0
-
-
1.43
ENST00000381196
43
ENSE00001012021
chr9:
8340469-8340343
127
PTPRD_HUMAN
1709-1751
43
0
-
-
1.44
ENST00000381196
44
ENSE00001656481
chr9:
8339047-8338922
126
PTPRD_HUMAN
1752-1793
42
0
-
-
1.45
ENST00000381196
45
ENSE00001707976
chr9:
8331736-8331582
155
PTPRD_HUMAN
1794-1845
52
0
-
-
1.46
ENST00000381196
46
ENSE00001012025
chr9:
8319966-8319831
136
PTPRD_HUMAN
1845-1890
46
0
-
-
1.47c
ENST00000381196
47c
ENSE00001254378
chr9:
8317942-8314246
3697
PTPRD_HUMAN
1891-1912
22
0
-
-
1.49a
ENST00000381196
49a
ENSE00001922875
chr9:
10612509-10612398
112
PTPRD_HUMAN
-
0
0
-
-
1.50a
ENST00000381196
50a
ENSE00001820932
chr9:
10341062-10340963
100
PTPRD_HUMAN
-
0
0
-
-
1.51
ENST00000381196
51
ENSE00001895238
chr9:
10033790-10033718
73
PTPRD_HUMAN
-
0
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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