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2YD5
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE LAR
Authors
:
C. H. Coles, Y. Shen, A. P. Tenney, C. Siebold, G. C. Sutton, W. Lu, J. T. Ga E. Y. Jones, J. G. Flanagan, A. R. Aricescu
Date
:
17 Mar 11 (Deposition) - 13 Apr 11 (Release) - 04 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. H. Coles, Y. Shen, A. P. Tenney, C. Siebold, G. C. Sutton, W. Lu, J. T. Gallagher, E. Y. Jones, J. G. Flanagan, A. R. Aricescu
Proteoglycan-Specific Molecular Switch For Rptp Sigma Clustering And Neuronal Extension.
Science V. 332 484 2011
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(6, 6)
Info
All Exons
Exon 1.5b (A:30-31)
Exon 1.6c (A:31-79)
Exon 1.7 (A:80-127)
Exon 1.8 (A:127-190)
Exon 1.10a (A:190-227)
Exon 1.13 (A:227-228)
View:
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All Exon Boundaries
1: Boundary 1.4/1.5b
2: Boundary 1.5b/1.6c
3: Boundary 1.6c/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.10a
6: Boundary 1.10a/1.13
7: Boundary 1.13/1.14b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000359947
3a
ENSE00001268253
chr1:
43996547-43996761
215
PTPRF_HUMAN
-
0
0
-
-
1.4
ENST00000359947
4
ENSE00001369939
chr1:
44003869-44003948
80
PTPRF_HUMAN
-
0
0
-
-
1.5b
ENST00000359947
5b
ENSE00002190863
chr1:
44010702-44010837
136
PTPRF_HUMAN
1-31
31
1
A:30-31
2
1.6c
ENST00000359947
6c
ENSE00001612970
chr1:
44019163-44019308
146
PTPRF_HUMAN
31-79
49
1
A:31-79
49
1.7
ENST00000359947
7
ENSE00001771120
chr1:
44019471-44019612
142
PTPRF_HUMAN
80-127
48
1
A:80-127
48
1.8
ENST00000359947
8
ENSE00001723929
chr1:
44035261-44035449
189
PTPRF_HUMAN
127-190
64
1
A:127-190
64
1.10a
ENST00000359947
10a
ENSE00001705341
chr1:
44044481-44044591
111
PTPRF_HUMAN
190-227
38
1
A:190-227
38
1.13
ENST00000359947
13
ENSE00001706696
chr1:
44054402-44054671
270
PTPRF_HUMAN
227-317
91
1
A:227-228
2
1.14b
ENST00000359947
14b
ENSE00001714914
chr1:
44056643-44057224
582
PTPRF_HUMAN
317-511
195
0
-
-
1.15
ENST00000359947
15
ENSE00001636757
chr1:
44057483-44057619
137
PTPRF_HUMAN
511-556
46
0
-
-
1.16
ENST00000359947
16
ENSE00000957339
chr1:
44058128-44058272
145
PTPRF_HUMAN
557-605
49
0
-
-
1.17
ENST00000359947
17
ENSE00000957341
chr1:
44063419-44063724
306
PTPRF_HUMAN
605-707
103
0
-
-
1.18b
ENST00000359947
18b
ENSE00000957342
chr1:
44064391-44064584
194
PTPRF_HUMAN
707-771
65
0
-
-
1.19
ENST00000359947
19
ENSE00000957343
chr1:
44067742-44067768
27
PTPRF_HUMAN
772-780
9
0
-
-
1.20b
ENST00000359947
20b
ENSE00000957344
chr1:
44069087-44069204
118
PTPRF_HUMAN
781-820
40
0
-
-
1.21
ENST00000359947
21
ENSE00000957345
chr1:
44069282-44069860
579
PTPRF_HUMAN
820-1013
194
0
-
-
1.22
ENST00000359947
22
ENSE00000957346
chr1:
44070574-44070671
98
PTPRF_HUMAN
1013-1045
33
0
-
-
1.23
ENST00000359947
23
ENSE00000957347
chr1:
44070861-44071114
254
PTPRF_HUMAN
1046-1130
85
0
-
-
1.24a
ENST00000359947
24a
ENSE00000957348
chr1:
44071200-44071293
94
PTPRF_HUMAN
1130-1161
32
0
-
-
1.25
ENST00000359947
25
ENSE00000957349
chr1:
44071911-44072129
219
PTPRF_HUMAN
1162-1234
73
0
-
-
1.26a
ENST00000359947
26a
ENSE00000957350
chr1:
44072485-44072639
155
PTPRF_HUMAN
1235-1286
52
0
-
-
1.27
ENST00000359947
27
ENSE00000957351
chr1:
44075054-44075169
116
PTPRF_HUMAN
1286-1325
40
0
-
-
1.29b
ENST00000359947
29b
ENSE00001720928
chr1:
44079289-44079386
98
PTPRF_HUMAN
1325-1357
33
0
-
-
1.30
ENST00000359947
30
ENSE00000957369
chr1:
44083116-44083239
124
PTPRF_HUMAN
1358-1399
42
0
-
-
1.31
ENST00000359947
31
ENSE00001680656
chr1:
44083407-44083582
176
PTPRF_HUMAN
1399-1457
59
0
-
-
1.32
ENST00000359947
32
ENSE00000957355
chr1:
44084301-44084420
120
PTPRF_HUMAN
1458-1497
40
0
-
-
1.33
ENST00000359947
33
ENSE00001638469
chr1:
44084719-44084873
155
PTPRF_HUMAN
1498-1549
52
0
-
-
1.34
ENST00000359947
34
ENSE00000957357
chr1:
44084959-44085244
286
PTPRF_HUMAN
1549-1644
96
0
-
-
1.35
ENST00000359947
35
ENSE00000957358
chr1:
44085351-44085529
179
PTPRF_HUMAN
1645-1704
60
0
-
-
1.36a
ENST00000359947
36a
ENSE00000957359
chr1:
44085766-44085892
127
PTPRF_HUMAN
1704-1746
43
0
-
-
1.36c
ENST00000359947
36c
ENSE00001684377
chr1:
44086125-44086250
126
PTPRF_HUMAN
1747-1788
42
0
-
-
1.37
ENST00000359947
37
ENSE00001754814
chr1:
44086509-44086663
155
PTPRF_HUMAN
1789-1840
52
0
-
-
1.38
ENST00000359947
38
ENSE00001664652
chr1:
44086768-44086903
136
PTPRF_HUMAN
1840-1885
46
0
-
-
1.39f
ENST00000359947
39f
ENSE00001775546
chr1:
44087606-44089337
1732
PTPRF_HUMAN
1886-1907
22
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2yd5a1 (A:30-124)
1b: SCOP_d2yd5a2 (A:125-228)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d2yd5a1
A:30-124
1b
d2yd5a2
A:125-228
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_I_set_2yd5A01 (A:135-225)
1b: PFAM_I_set_2yd5A02 (A:135-225)
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Clan
:
Ig
(577)
Family
:
I-set
(67)
Homo sapiens (Human)
(50)
1a
I-set-2yd5A01
A:135-225
1b
I-set-2yd5A02
A:135-225
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