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2YC0
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (119 KB)
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(1)
Title
:
FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH R-2-HYDROXYGLUTARATE
Authors
:
R. Chowdhury, I. J. Clifton, C. J. Schofield
Date
:
10 Mar 11 (Deposition) - 30 Mar 11 (Release) - 11 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase, Dioxygenase, Metal-Binding, Transcription, Helix- Loop-Helix-Beta, Dsbh, Facial Triad, Asparaginyl/Aspartyl Hydroxylase, Transcription And Epigenetic Regulation, Signaling, Development, Cell Structure, Ankyrin Repeat Domain, Ard, Beta- Hydroxylation, Transcription Activator/Inhibitor, Phosphorylation, S-Nitrosylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Chowdhury, K. K. Yeoh, Y. M. Tian, L. Hillringhaus, E. A. Bagg, N. R. Rose, I. K. Leung, X. S. Li, E. C. Woon, M. Yang, M. A. Mcdonough, O. N. King, I. J. Clifton, R. J. Klose, T. D. Claridge, P. J. Ratcliffe, C. J. Schofield, A. Kawamura
The Oncometabolite 2-Hydroxyglutarate Inhibits Histone Lysine Demethylases.
Embo Rep. V. 12 463 2011
[
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: (2R)-2-HYDROXYPENTANEDIOIC ACID (2HGa)
2a: FE (II) ION (FE2a)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2HG
1
Ligand/Ion
(2R)-2-HYDROXYPENTANEDIOIC ACID
2
FE2
1
Ligand/Ion
FE (II) ION
3
GOL
3
Ligand/Ion
GLYCEROL
4
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:199 , ASP A:201 , HIS A:279 , 2HG A:601 , GOL A:604
BINDING SITE FOR RESIDUE FE2 A 501
2
AC2
SOFTWARE
TYR A:145 , THR A:196 , HIS A:199 , ASP A:201 , ASN A:205 , PHE A:207 , LYS A:214 , HIS A:279 , ILE A:281 , ASN A:294 , TRP A:296 , FE2 A:501 , GOL A:604
BINDING SITE FOR RESIDUE 2HG A 601
3
AC3
SOFTWARE
LYS A:99 , LEU A:101 , TYR A:230 , SER A:240 , GLN A:241 , ASP A:243 , HOH A:2091
BINDING SITE FOR RESIDUE GOL A 602
4
AC4
SOFTWARE
ASP A:222 , LYS A:315 , MET A:319
BINDING SITE FOR RESIDUE GOL A 603
5
AC5
SOFTWARE
TYR A:102 , GLN A:147 , THR A:196 , HIS A:199 , ASP A:201 , TRP A:296 , FE2 A:501 , 2HG A:601
BINDING SITE FOR RESIDUE GOL A 604
6
AC6
SOFTWARE
ASP A:222 , LYS A:311 , ALA A:312 , HOH A:2092 , HOH A:2093
BINDING SITE FOR RESIDUE SO4 A 901
7
AC7
SOFTWARE
ARG A:138 , GLY A:140 , GLU A:141 , GLU A:142
BINDING SITE FOR RESIDUE SO4 A 902
8
AC8
SOFTWARE
ARG A:120
BINDING SITE FOR RESIDUE SO4 A 904
9
AC9
SOFTWARE
ARG A:143 , GLU A:192 , GLY A:193 , LEU A:285 , ASN A:286
BINDING SITE FOR RESIDUE SO4 A 905
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051028 (P41A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051028
P
41
A
HIF1N_HUMAN
Polymorphism
2295778
A
P
41
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: JMJC (A:142-312)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JMJC
PS51184
JmjC domain profile.
HIF1N_HUMAN
142-312
1
A:142-312
[
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Exons
(8, 8)
Info
All Exons
Exon 1.2b (A:1-59)
Exon 1.3b (A:60-143)
Exon 1.4b (A:143-193)
Exon 1.5a (A:193-241)
Exon 1.6b (A:242-277)
Exon 1.7 (A:277-298)
Exon 1.8b (A:299-335)
Exon 1.9b (A:336-349)
View:
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All Exon Boundaries
1: Boundary -/1.2b
2: Boundary 1.2b/1.3b
3: Boundary 1.3b/1.4b
4: Boundary 1.4b/1.5a
5: Boundary 1.5a/1.6b
6: Boundary 1.6b/1.7
7: Boundary 1.7/1.8b
8: Boundary 1.8b/1.9b
9: Boundary 1.9b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000299163
2b
ENSE00001695622
chr10:
102295616-102295892
277
HIF1N_HUMAN
1-59
59
1
A:1-59
59
1.3b
ENST00000299163
3b
ENSE00001100126
chr10:
102296168-102296418
251
HIF1N_HUMAN
60-143
84
1
A:60-143
84
1.4b
ENST00000299163
4b
ENSE00001100124
chr10:
102300391-102300539
149
HIF1N_HUMAN
143-193
51
1
A:143-193
51
1.5a
ENST00000299163
5a
ENSE00001100127
chr10:
102304708-102304853
146
HIF1N_HUMAN
193-241
49
1
A:193-241
49
1.6b
ENST00000299163
6b
ENSE00001100128
chr10:
102305700-102305806
107
HIF1N_HUMAN
242-277
36
1
A:242-277
36
1.7
ENST00000299163
7
ENSE00001100132
chr10:
102306275-102306338
64
HIF1N_HUMAN
277-298
22
1
A:277-298
22
1.8b
ENST00000299163
8b
ENSE00001100130
chr10:
102306897-102307007
111
HIF1N_HUMAN
299-335
37
1
A:299-335
37
1.9b
ENST00000299163
9b
ENSE00001212367
chr10:
102307850-102309763
1914
HIF1N_HUMAN
336-349
14
1
A:336-349
14
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2yc0a_ (A:)
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Folds
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)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Clavaminate synthase-like
(197)
Family
:
Hypoxia-inducible factor HIF ihhibitor (FIH1)
(26)
Protein domain
:
Hypoxia-inducible factor HIF ihhibitor (FIH1)
(26)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d2yc0a_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Cupin_8_2yc0A01 (A:48-302)
View:
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Clans
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)
(
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Families
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(
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Organisms
(
)
(
)
Clan
:
Cupin
(179)
Family
:
Cupin_8
(14)
Homo sapiens (Human)
(14)
1a
Cupin_8-2yc0A01
A:48-302
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Chain A
Asymmetric Unit 1
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