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2YBV
Asym. Unit
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Asym.Unit (697 KB)
Biol.Unit 1 (686 KB)
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(1)
Title
:
STRUCTURE OF RUBISCO FROM THERMOSYNECHOCOCCUS ELONGATUS
Authors
:
B. Terlecka, V. Wilhelmi, W. Bialek, B. Gubernator, A. Szczepaniak, E.
Date
:
10 Mar 11 (Deposition) - 28 Mar 12 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Keywords
:
Co2/O2 Specificity, Carbon Dioxide Fixation, Photosynthesis, Thermostability, Photorespiration, Monooxygenase, Hydroxylation, Oxidoreductase, Lyase, Rubisco, Chloroplast, Calvin Cycle, Thermophilic Cyanobacteria
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Terlecka, V. Wilhelmi, W. Bialek, B. Gubernator, A. Szczepaniak, E. Hofmann
Structure Of Ribulose-1, 5-Bisphosphate Carboxylase Oxygenase From Thermosynechococcus Elongatus
To Be Published
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Hetero Components
(1, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
15
Ligand/Ion
CHLORIDE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:305 , HIS A:310
BINDING SITE FOR RESIDUE CL A1460
02
AC2
SOFTWARE
ARG A:295
BINDING SITE FOR RESIDUE CL A1461
03
AC3
SOFTWARE
LYS C:305 , HIS C:310 , HOH C:2099
BINDING SITE FOR RESIDUE CL C1460
04
AC4
SOFTWARE
ARG C:295
BINDING SITE FOR RESIDUE CL C1461
05
AC5
SOFTWARE
ARG E:295
BINDING SITE FOR RESIDUE CL E1460
06
AC6
SOFTWARE
LYS G:305 , HIS G:310
BINDING SITE FOR RESIDUE CL G1460
07
AC7
SOFTWARE
ARG G:295
BINDING SITE FOR RESIDUE CL G1461
08
AC8
SOFTWARE
ARG I:134 , LYS I:305 , HIS I:310 , HOH I:2022
BINDING SITE FOR RESIDUE CL I1460
09
AC9
SOFTWARE
ARG I:295
BINDING SITE FOR RESIDUE CL I1461
10
BC1
SOFTWARE
LYS K:305 , HIS K:310
BINDING SITE FOR RESIDUE CL K1460
11
BC2
SOFTWARE
ARG K:295
BINDING SITE FOR RESIDUE CL K1461
12
BC3
SOFTWARE
ARG M:295
BINDING SITE FOR RESIDUE CL M1460
13
BC4
SOFTWARE
LYS M:305 , HIS M:310
BINDING SITE FOR RESIDUE CL M1461
14
BC5
SOFTWARE
ARG O:134 , LYS O:305 , HIS O:310
BINDING SITE FOR RESIDUE CL O1460
15
BC6
SOFTWARE
ARG O:295
BINDING SITE FOR RESIDUE CL O1461
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: RUBISCO_LARGE (A:196-204,C:196-204,E:196-204,G:19...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RUBISCO_LARGE
PS00157
Ribulose bisphosphate carboxylase large chain active site.
RBL_THEEB
196-204
8
A:196-204
C:196-204
E:196-204
G:196-204
I:196-204
K:196-204
M:196-204
O:196-204
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d2ybva1 (A:23-150)
1b: SCOP_d2ybvm1 (M:23-150)
1c: SCOP_d2ybvo1 (O:23-150)
1d: SCOP_d2ybvc1 (C:23-150)
1e: SCOP_d2ybve1 (E:23-150)
1f: SCOP_d2ybvg1 (G:23-150)
1g: SCOP_d2ybvi1 (I:23-150)
1h: SCOP_d2ybvk1 (K:23-150)
2a: SCOP_d2ybvb_ (B:)
2b: SCOP_d2ybvn_ (N:)
2c: SCOP_d2ybvp_ (P:)
2d: SCOP_d2ybvd_ (D:)
2e: SCOP_d2ybvf_ (F:)
2f: SCOP_d2ybvh_ (H:)
2g: SCOP_d2ybvj_ (J:)
2h: SCOP_d2ybvl_ (L:)
3a: SCOP_d2ybva2 (A:151-459)
3b: SCOP_d2ybvm2 (M:151-459)
3c: SCOP_d2ybvo2 (O:151-459)
3d: SCOP_d2ybvc2 (C:151-459)
3e: SCOP_d2ybve2 (E:151-459)
3f: SCOP_d2ybvg2 (G:151-459)
3g: SCOP_d2ybvi2 (I:151-459)
3h: SCOP_d2ybvk2 (K:151-459)
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Classes
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)
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Folds
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)
(
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Superfamilies
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)
(
)
Families
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RuBisCO, large subunit, small (N-terminal) domain
(66)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Thermosynechococcus elongatus [TaxId: 197221]
(2)
1a
d2ybva1
A:23-150
1b
d2ybvm1
M:23-150
1c
d2ybvo1
O:23-150
1d
d2ybvc1
C:23-150
1e
d2ybve1
E:23-150
1f
d2ybvg1
G:23-150
1g
d2ybvi1
I:23-150
1h
d2ybvk1
K:23-150
Fold
:
RuBisCO, small subunit
(44)
Superfamily
:
RuBisCO, small subunit
(44)
Family
:
RuBisCO, small subunit
(44)
Protein domain
:
automated matches
(16)
Thermosynechococcus elongatus [TaxId: 197221]
(2)
2a
d2ybvb_
B:
2b
d2ybvn_
N:
2c
d2ybvp_
P:
2d
d2ybvd_
D:
2e
d2ybvf_
F:
2f
d2ybvh_
H:
2g
d2ybvj_
J:
2h
d2ybvl_
L:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
RuBisCo, C-terminal domain
(66)
Family
:
RuBisCo, large subunit, C-terminal domain
(56)
Protein domain
:
automated matches
(16)
Thermosynechococcus elongatus [TaxId: 197221]
(2)
3a
d2ybva2
A:151-459
3b
d2ybvm2
M:151-459
3c
d2ybvo2
O:151-459
3d
d2ybvc2
C:151-459
3e
d2ybve2
E:151-459
3f
d2ybvg2
G:151-459
3g
d2ybvi2
I:151-459
3h
d2ybvk2
K:151-459
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Chain B
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Chain E
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Chain H
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