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2YBF
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
COMPLEX OF RAD18 (RAD6 BINDING DOMAIN) WITH RAD6B
Authors
:
R. G. Hibbert, T. K. Sixma
Date
:
08 Mar 11 (Deposition) - 20 Apr 11 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ligase, E2 Ubiquitin Conjugating Enzyme, E3 Ubiquitin Ligase, Translesion Synthesis, Pcna Ubiquitination
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. G. Hibbert, A. Huang, R. Boelens, T. K. Sixma
E3 Ligase Rad18 Promotes Monoubiquitination Rather Than Ubiquitin Chain Formation By E2 Enzyme Rad6.
Proc. Natl. Acad. Sci. Usa V. 108 5590 2011
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: SODIUM ION (NAa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
NA
1
Ligand/Ion
SODIUM ION
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:13 , CYS A:88 , GLN A:93 , ASN A:94
BINDING SITE FOR RESIDUE BME A1153
2
AC2
SOFTWARE
ARG A:7 , ARG A:8 , ARG A:11 , NA A:1155 , HOH A:2001
BINDING SITE FOR RESIDUE SO4 A1154
3
AC3
SOFTWARE
ARG A:11 , SO4 A:1154 , HOH A:2006
BINDING SITE FOR RESIDUE NA A1155
4
AC4
SOFTWARE
LYS B:341 , TYR B:342 , ARG B:343
BINDING SITE FOR RESIDUE SO4 B1362
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_CONJUGAT_2 (A:7-139)
2: UBIQUITIN_CONJUGAT_1 (A:77-92)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UBE2B_HUMAN
7-139
1
A:7-139
2
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UBE2B_HUMAN
77-92
1
A:77-92
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:3-15)
Exon 1.2a (A:15-42)
Exon 1.3 (A:42-51)
Exon 1.4 (A:51-81)
Exon 1.6b (A:81-110)
Exon 1.8g (A:111-152)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.6b
6: Boundary 1.6b/1.8g
7: Boundary 1.8g/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000265339
1a
ENSE00001042376
chr5:
133706870-133707330
461
UBE2B_HUMAN
1-15
15
1
A:3-15
13
1.2a
ENST00000265339
2a
ENSE00000953701
chr5:
133710074-133710154
81
UBE2B_HUMAN
15-42
28
1
A:15-42
28
1.3
ENST00000265339
3
ENSE00001042373
chr5:
133712360-133712385
26
UBE2B_HUMAN
42-51
10
1
A:42-51
10
1.4
ENST00000265339
4
ENSE00000803566
chr5:
133716410-133716499
90
UBE2B_HUMAN
51-81
31
1
A:51-81
31
1.6b
ENST00000265339
6b
ENSE00000763369
chr5:
133724016-133724104
89
UBE2B_HUMAN
81-110
30
1
A:81-110
30
1.8g
ENST00000265339
8g
ENSE00000803567
chr5:
133725916-133727683
1768
UBE2B_HUMAN
111-152
42
1
A:111-152
42
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ybfa_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UBC-related
(135)
Protein domain
:
Ubiquitin conjugating enzyme, UBC
(84)
Human (Homo sapiens), ubc2b [TaxId: 9606]
(4)
1a
d2ybfa_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_UQ_con_2ybfA01 (A:8-145)
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Clans
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Organisms
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)
(
)
Clan
:
UBC
(69)
Family
:
UQ_con
(55)
Homo sapiens (Human)
(36)
1a
UQ_con-2ybfA01
A:8-145
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