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Asym. Unit
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Asym.Unit (631 KB)
Biol.Unit 1, α-C (2.4 MB)
Biol.Unit 1 (2.4 MB)
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(1)
Title
:
HG INHIBITED SULFUR OXYGENASE REDUCTASE
Authors
:
A. Veith, T. Urich, K. Seyfarth, J. Protze, C. Frazao, A. Kletzin
Date
:
25 Feb 11 (Deposition) - 21 Dec 11 (Release) - 21 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
Oxidoreductase, Mononuclear Non-Heme Iron, Biogeochemical Sulfur Cycle, Thermophilic, Cysteine Persulphide, Icosatetramer
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Veith, T. Urich, K. Seyfarth, J. Protze, C. Frazao, A. Kletzin
Substrate Pathways And Mechanisms Of Inhibition In The Sulfur Oxygenase Reductase Of Acidianus Ambivalens.
Front. Microbiol. V. 2 37 2011
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 30)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
2a: S-MERCAPTOCYSTEINE (CSSa)
2b: S-MERCAPTOCYSTEINE (CSSb)
2c: S-MERCAPTOCYSTEINE (CSSc)
2d: S-MERCAPTOCYSTEINE (CSSd)
2e: S-MERCAPTOCYSTEINE (CSSe)
2f: S-MERCAPTOCYSTEINE (CSSf)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
3c: FE (III) ION (FEc)
3d: FE (III) ION (FEd)
3e: FE (III) ION (FEe)
3f: FE (III) ION (FEf)
4a: MERCURY (II) ION (HGa)
4b: MERCURY (II) ION (HGb)
4c: MERCURY (II) ION (HGc)
4d: MERCURY (II) ION (HGd)
4e: MERCURY (II) ION (HGe)
4f: MERCURY (II) ION (HGf)
4g: MERCURY (II) ION (HGg)
4h: MERCURY (II) ION (HGh)
4i: MERCURY (II) ION (HGi)
4j: MERCURY (II) ION (HGj)
4k: MERCURY (II) ION (HGk)
4l: MERCURY (II) ION (HGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
CSS
6
Mod. Amino Acid
S-MERCAPTOCYSTEINE
3
FE
6
Ligand/Ion
FE (III) ION
4
HG
12
Ligand/Ion
MERCURY (II) ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:86 , HIS A:90 , GLU A:114 , HOH A:2017 , HOH A:2020
BINDING SITE FOR RESIDUE FE A 401
02
AC2
SOFTWARE
GLY A:27 , CSS A:31 , PHE A:43 , ASN A:45 , ACT A:405
BINDING SITE FOR RESIDUE HG A 404
03
AC3
SOFTWARE
GLY A:27 , PRO A:28 , ASN A:45 , MET A:297 , HG A:404
BINDING SITE FOR RESIDUE ACT A 405
04
AC4
SOFTWARE
CYS A:101 , MET A:108
BINDING SITE FOR RESIDUE HG A 406
05
AC5
SOFTWARE
HIS B:86 , HIS B:90 , GLU B:114 , HOH B:2025 , HOH B:2026
BINDING SITE FOR RESIDUE FE B 401
06
AC6
SOFTWARE
GLY B:27 , CSS B:31 , PHE B:43 , ASN B:45 , ACT B:405
BINDING SITE FOR RESIDUE HG B 404
07
AC7
SOFTWARE
GLY B:27 , PRO B:28 , ASN B:45 , MET B:297 , HG B:404
BINDING SITE FOR RESIDUE ACT B 405
08
AC8
SOFTWARE
CYS B:101
BINDING SITE FOR RESIDUE HG B 406
09
AC9
SOFTWARE
HIS C:86 , HIS C:90 , GLU C:114 , HOH C:2021 , HOH C:2028
BINDING SITE FOR RESIDUE FE C 401
10
BC1
SOFTWARE
GLY C:27 , CSS C:31 , PHE C:43 , ASN C:45 , ACT C:405
BINDING SITE FOR RESIDUE HG C 404
11
BC2
SOFTWARE
GLY C:27 , PRO C:28 , ASN C:45 , MET C:297 , HG C:404
BINDING SITE FOR RESIDUE ACT C 405
12
BC3
SOFTWARE
CYS C:101
BINDING SITE FOR RESIDUE HG C 406
13
BC4
SOFTWARE
HIS D:86 , HIS D:90 , GLU D:114 , HOH D:2023 , HOH D:2024
BINDING SITE FOR RESIDUE FE D 401
14
BC5
SOFTWARE
GLY D:27 , CSS D:31 , PHE D:43 , ASN D:45 , ACT D:405
BINDING SITE FOR RESIDUE HG D 404
15
BC6
SOFTWARE
GLY D:27 , PRO D:28 , ASN D:45 , MET D:297 , HG D:404
BINDING SITE FOR RESIDUE ACT D 405
16
BC7
SOFTWARE
CYS D:101 , MET D:108
BINDING SITE FOR RESIDUE HG D 406
17
BC8
SOFTWARE
HIS E:86 , HIS E:90 , GLU E:114 , HOH E:2020 , HOH E:2023
BINDING SITE FOR RESIDUE FE E 401
18
BC9
SOFTWARE
GLY E:27 , CSS E:31 , PHE E:43 , ASN E:45 , ACT E:405
BINDING SITE FOR RESIDUE HG E 404
19
CC1
SOFTWARE
GLY E:27 , PRO E:28 , MET E:297 , HG E:404
BINDING SITE FOR RESIDUE ACT E 405
20
CC2
SOFTWARE
CYS E:101
BINDING SITE FOR RESIDUE HG E 406
21
CC3
SOFTWARE
HIS F:86 , HIS F:90 , GLU F:114 , HOH F:2030 , HOH F:2031
BINDING SITE FOR RESIDUE FE F 401
22
CC4
SOFTWARE
GLY F:27 , CSS F:31 , PHE F:43 , ASN F:45 , ACT F:405
BINDING SITE FOR RESIDUE HG F 404
23
CC5
SOFTWARE
GLY F:27 , PRO F:28 , ASN F:45 , MET F:297 , HG F:404
BINDING SITE FOR RESIDUE ACT F 405
24
CC6
SOFTWARE
CYS F:101 , CYS F:104 , MET F:108
BINDING SITE FOR RESIDUE HG F 406
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2yawa_ (A:)
1b: SCOP_d2yawb_ (B:)
1c: SCOP_d2yawc_ (C:)
1d: SCOP_d2yawd_ (D:)
1e: SCOP_d2yawe_ (E:)
1f: SCOP_d2yawf_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Dimeric alpha+beta barrel
(122)
Family
:
SOR-like
(6)
Protein domain
:
automated matches
(5)
Acidianus ambivalens [TaxId: 2283]
(4)
1a
d2yawa_
A:
1b
d2yawb_
B:
1c
d2yawc_
C:
1d
d2yawd_
D:
1e
d2yawe_
E:
1f
d2yawf_
F:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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Asym.Unit (631 KB)
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Biol.Unit 1 (2.4 MB)
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