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2YAN
Asym. Unit
Info
Asym.Unit (85 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (40 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SECOND GLUTAREDOXIN DOMAIN OF HUMAN TXNL2
Authors
:
M. Vollmar, C. Johansson, R. Cocking, J. R. C. Muniz, T. Krojer, C. Aller F. Von Delft, C. Bountra, C. H. Arrowsmith, J. Weigelt, A. Edwards, U. Oppermann
Date
:
23 Feb 11 (Deposition) - 30 Nov 11 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Vollmar, C. Johansson, R. Cocking, J. R. C. Muniz, T. Krojer, C. Allerston, F. Von Delft, C. Bountra, C. H. Arrowsmith, J. Weigelt, A. Edwards, U. Oppermann
Crystal Structure Of The Second Glutaredoxin Domain Of Human Txnl2
To Be Published
[
close entry info
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
3a: FE (III) ION (FEa)
4a: GLUTATHIONE (GSHa)
4b: GLUTATHIONE (GSHb)
5a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
FE
1
Ligand/Ion
FE (III) ION
4
GSH
2
Ligand/Ion
GLUTATHIONE
5
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:319 , GLU A:323 , HOH A:2093
BINDING SITE FOR RESIDUE EDO A1334
02
AC2
SOFTWARE
LYS A:294 , ASN A:298 , TRP A:299 , EDO B:1335
BINDING SITE FOR RESIDUE EDO A1335
03
AC3
SOFTWARE
CYS A:261 , GSH A:1341 , HOH A:2094 , HOH A:2095 , HOH A:2096 , GLN B:257
BINDING SITE FOR RESIDUE EDO A1336
04
AC4
SOFTWARE
LYS A:256 , GLU A:279 , THR A:280 , HOH A:2045
BINDING SITE FOR RESIDUE EDO A1337
05
AC5
SOFTWARE
GSH A:1341 , HOH A:2023
BINDING SITE FOR RESIDUE FE A1338
06
AC6
SOFTWARE
LYS A:253 , LYS A:260 , ARG A:290
BINDING SITE FOR RESIDUE SO4 A1339
07
AC7
SOFTWARE
GLY A:314 , ASP A:316 , ILE A:317 , GSH A:1341
BINDING SITE FOR RESIDUE CL A1340
08
AC8
SOFTWARE
LYS A:253 , CYS A:261 , PHE A:263 , ARG A:290 , LYS A:294 , THR A:301 , TYR A:302 , PRO A:303 , GLY A:314 , LEU A:315 , ASP A:316 , EDO A:1336 , FE A:1338 , CL A:1340 , HOH A:2065 , HOH A:2097 , GLN B:257
BINDING SITE FOR RESIDUE GSH A1341
09
AC9
SOFTWARE
ASN A:298 , EDO A:1335 , LYS B:256 , GLU B:279 , THR B:280 , HOH B:2042 , HOH B:2043
BINDING SITE FOR RESIDUE EDO B1335
10
BC1
SOFTWARE
LEU A:321 , GLU A:326 , GLN B:266 , GLU B:269 , LYS B:319
BINDING SITE FOR RESIDUE EDO B1336
11
BC2
SOFTWARE
GLU A:320 , GLY B:262 , GSH B:1338
BINDING SITE FOR RESIDUE EDO B1337
12
BC3
SOFTWARE
LYS B:253 , LYS B:260 , CYS B:261 , ARG B:290 , EDO B:1337 , HOH B:2026
BINDING SITE FOR RESIDUE GSH B1338
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLUTAREDOXIN_2 (-|A:236-334,B:236-334)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTAREDOXIN_2
PS51354
Glutaredoxin domain profile.
GLRX3_HUMAN
134-236
236-335
2
-
A:236-334
B:236-334
[
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Exons
(6, 12)
Info
All Exons
Exon 1.7 (A:230-238 | B:230-238)
Exon 1.8 (A:238-257 | B:238-257)
Exon 1.9 (A:258-275 | B:258-275)
Exon 1.10 (A:275-288 | B:275-288)
Exon 1.11 (A:289-319 | B:289-319)
Exon 1.12a (A:320-334 | B:320-334)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
6: Boundary 1.11/1.12a
7: Boundary 1.12a/1.13b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000368644
1
ENSE00002174390
chr10:
131934663-131934776
114
GLRX3_HUMAN
1-31
31
0
-
-
1.2
ENST00000368644
2
ENSE00000728668
chr10:
131943475-131943583
109
GLRX3_HUMAN
31-67
37
0
-
-
1.4
ENST00000368644
4
ENSE00000728671
chr10:
131958259-131958333
75
GLRX3_HUMAN
68-92
25
0
-
-
1.5b
ENST00000368644
5b
ENSE00000728676
chr10:
131959060-131959261
202
GLRX3_HUMAN
93-160
68
0
-
-
1.6
ENST00000368644
6
ENSE00000728678
chr10:
131964771-131964943
173
GLRX3_HUMAN
160-217
58
0
-
-
1.7
ENST00000368644
7
ENSE00000728681
chr10:
131965183-131965244
62
GLRX3_HUMAN
218-238
21
2
A:230-238
B:230-238
9
9
1.8
ENST00000368644
8
ENSE00000728683
chr10:
131967697-131967754
58
GLRX3_HUMAN
238-257
20
2
A:238-257
B:238-257
20
20
1.9
ENST00000368644
9
ENSE00000728687
chr10:
131969848-131969900
53
GLRX3_HUMAN
258-275
18
2
A:258-275
B:258-275
18
18
1.10
ENST00000368644
10
ENSE00000728691
chr10:
131973131-131973170
40
GLRX3_HUMAN
275-288
14
2
A:275-288
B:275-288
14
14
1.11
ENST00000368644
11
ENSE00000577957
chr10:
131973261-131973353
93
GLRX3_HUMAN
289-319
31
2
A:289-319
B:289-319
31
31
1.12a
ENST00000368644
12a
ENSE00001217321
chr10:
131977606-131977684
79
GLRX3_HUMAN
320-335
16
2
A:320-334
B:320-334
15
15
1.13b
ENST00000368644
13b
ENSE00001217252
chr10:
131978377-131978640
264
GLRX3_HUMAN
-
0
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2yana_ (A:)
1b: SCOP_d2yanb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Thioltransferase
(167)
Protein domain
:
automated matches
(27)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2yana_
A:
1b
d2yanb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (85 KB)
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