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2YAF
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (180 KB)
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(1)
Title
:
X-RAY INDUCED REDUCTION OF LACCASE FROM THERMUS THERMOPHILUS HB27 (12.5-25.0 PERCENT DOSE)
Authors
:
H. Serrano-Posada, E. Rudino-Pinera
Date
:
22 Feb 11 (Deposition) - 29 Feb 12 (Release) - 16 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase, Multicopper Oxidases
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Serrano-Posada, S. Centeno-Leija, S. P. Rojas-Trejo, C. Rodriguez-Almazan, V. Stojanoff, E. Rudino-Pinera
X-Ray-Induced Catalytic Active-Site Reduction Of A Multicopper Oxidase: Structural Insights Into The Proton- Relay Mechanism And O2-Reduction States.
Acta Crystallogr. , Sect. D V. 71 2396 2015
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
2e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
2f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
2g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
2h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
2i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
3a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
3b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
3c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
3d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
3e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
3f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
4a: HYDROXIDE ION (OHa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU
3
Ligand/Ion
COPPER (II) ION
2
MPD
9
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
MRD
6
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
4
OH
1
Ligand/Ion
HYDROXIDE ION
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:95 , HIS A:97 , TRP A:133 , HIS A:135 , HIS A:446 , OH A:1481
BINDING SITE FOR RESIDUE CU A1463
02
AC2
SOFTWARE
HIS A:393 , CYS A:445 , HIS A:450 , MET A:455
BINDING SITE FOR RESIDUE CU A1464
03
AC3
SOFTWARE
HIS A:95 , HIS A:137 , HIS A:396 , HIS A:398 , HIS A:444 , OH A:1481
BINDING SITE FOR RESIDUE CU A1465
04
AC4
SOFTWARE
ASP A:248 , LEU A:263 , GLU A:267 , ARG A:268 , TYR A:414 , LYS A:418 , MPD A:1471
BINDING SITE FOR RESIDUE MPD A1466
05
AC5
SOFTWARE
GLN A:56 , LEU A:339 , ARG A:436 , HOH A:2503 , HOH A:2504
BINDING SITE FOR RESIDUE MRD A1467
06
AC6
SOFTWARE
PRO A:191 , MET A:195 , MET A:354 , MET A:355 , MPD A:1477
BINDING SITE FOR RESIDUE MRD A1468
07
AC7
SOFTWARE
THR A:212 , ARG A:280 , HOH A:2501 , HOH A:2506
BINDING SITE FOR RESIDUE MRD A1469
08
AC8
SOFTWARE
GLY A:140 , TRP A:194 , ARG A:453
BINDING SITE FOR RESIDUE MPD A1470
09
AC9
SOFTWARE
GLU A:260 , PRO A:413 , MPD A:1466 , HOH A:2507
BINDING SITE FOR RESIDUE MPD A1471
10
BC1
SOFTWARE
GLU A:127 , LEU A:128 , SER A:158 , SER A:334 , HOH A:2180 , HOH A:2386 , HOH A:2508
BINDING SITE FOR RESIDUE MPD A1472
11
BC2
SOFTWARE
GLU A:257 , SER A:259 , ARG A:276 , LYS A:325 , MRD A:1479 , HOH A:2300 , HOH A:2314 , HOH A:2370
BINDING SITE FOR RESIDUE MRD A1473
12
BC3
SOFTWARE
PRO A:342 , VAL A:343 , VAL A:344 , THR A:345
BINDING SITE FOR RESIDUE MPD A1474
13
BC4
SOFTWARE
PRO A:25 , SER A:26 , GLN A:216 , ASN A:362 , GLN A:364 , HOH A:2007 , HOH A:2263 , HOH A:2509
BINDING SITE FOR RESIDUE MPD A1475
14
BC5
SOFTWARE
LYS A:31 , GLY A:64 , HOH A:2510
BINDING SITE FOR RESIDUE MPD A1476
15
BC6
SOFTWARE
PRO A:191 , MET A:355 , MRD A:1468
BINDING SITE FOR RESIDUE MPD A1477
16
BC7
SOFTWARE
SER A:26 , GLN A:376 , GLN A:378 , THR A:379 , HOH A:2005
BINDING SITE FOR RESIDUE MPD A1478
17
BC8
SOFTWARE
ARG A:276 , MRD A:1473 , HOH A:2512 , HOH A:2513
BINDING SITE FOR RESIDUE MRD A1479
18
BC9
SOFTWARE
PRO A:144 , PRO A:188 , HIS A:189 , TRP A:194 , HOH A:2237 , HOH A:2514 , HOH A:2515
BINDING SITE FOR RESIDUE MRD A1480
19
CC1
SOFTWARE
HIS A:95 , HIS A:135 , HIS A:137 , HIS A:444 , HIS A:446 , CU A:1463 , CU A:1465 , HOH A:2516
BINDING SITE FOR RESIDUE OH A1481
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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SCOP Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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