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2YAB
Asym. Unit
Info
Asym.Unit (329 KB)
Biol.Unit 1 (320 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE AUTOINHIBITED FORM OF MOUSE DAPK2 IN COMPLEX WITH AMP
Authors
:
A. K. Patel, P. Kursula
Date
:
18 Feb 11 (Deposition) - 13 Apr 11 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Apoptosis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Patel, R. P. Yadav, V. Majava, I. Kursula, P. Kursula
Structure Of The Dimeric Autoinhibited Conformation Of Dapk2, A Pro-Apoptotic Protein Kinase.
J. Mol. Biol. V. 409 369 2011
[
close entry info
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
2a: CALCIUM ION (CAa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
CA
1
Ligand/Ion
CALCIUM ION
3
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:19 , GLY A:20 , SER A:21 , ALA A:25 , VAL A:27 , ALA A:40 , LYS A:42 , GLU A:94 , VAL A:96 , ILE A:160 , ASP A:161 , HOH A:2171 , HOH A:2345 , HOH A:2346 , HOH A:2347 , HOH A:2348 , HOH A:2349
BINDING SITE FOR RESIDUE AMP A1302
2
AC2
SOFTWARE
ARG A:271
BINDING SITE FOR RESIDUE SO4 A1303
3
AC3
SOFTWARE
ASN A:190 , HOH A:2222 , HOH A:2225 , ASN B:190 , HOH B:2226 , HOH B:2232
BINDING SITE FOR RESIDUE CA A1304
4
AC4
SOFTWARE
LEU B:19 , GLY B:20 , SER B:21 , VAL B:27 , ALA B:40 , LYS B:42 , ILE B:77 , GLU B:94 , VAL B:96 , GLU B:100 , ASN B:144 , ASP B:161 , HOH B:2041 , HOH B:2326 , HOH B:2327 , HOH B:2328 , HOH B:2329 , HOH B:2330
BINDING SITE FOR RESIDUE AMP B1302
5
AC5
SOFTWARE
LYS B:108 , GLU B:109 , SER B:110 , HOH B:2155
BINDING SITE FOR RESIDUE SO4 B1303
6
AC6
SOFTWARE
GLN A:299 , SER B:49 , ARG B:50 , HOH B:2331 , HOH B:2332
BINDING SITE FOR RESIDUE SO4 B1304
7
AC7
SOFTWARE
LYS A:222 , ARG B:47 , HOH B:2097 , HOH B:2333 , HOH B:2334 , HOH B:2335
BINDING SITE FOR RESIDUE SO4 B1305
8
AC8
SOFTWARE
ARG A:47 , HOH A:2072 , LYS B:222 , HOH B:2337
BINDING SITE FOR RESIDUE SO4 B1306
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:19-46,B:19-46)
2: PROTEIN_KINASE_ST (A:135-147,B:135-147)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
DAPK2_MOUSE
29-56
2
A:19-46
B:19-46
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
DAPK2_MOUSE
145-157
2
A:135-147
B:135-147
[
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]
Exons
(9, 18)
Info
All Exons
Exon 1.2 (A:3-21 | B:3-21)
Exon 1.3a (A:21-95 | B:21-95)
Exon 1.4 (A:95-141 | B:95-141)
Exon 1.6 (A:142-185 | B:142-185)
Exon 1.7 (A:185-201 | B:185-201)
Exon 1.8 (A:201-210 | B:201-210)
Exon 1.9 (A:210-261 | B:210-261)
Exon 1.10 (A:261-276 | B:261-276)
Exon 1.11b (A:277-301 | B:277-301)
View:
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All Exon Boundaries
01: Boundary 1.1a/1.2
02: Boundary 1.2/1.3a
03: Boundary 1.3a/1.4
04: Boundary 1.4/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11b
10: Boundary 1.11b/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSMUST00000034944
1a
ENSMUSE00000795818
chr9:
66006030-66006147
118
DAPK2_MOUSE
-
0
0
-
-
1.2
ENSMUST00000034944
2
ENSMUSE00000896779
chr9:
66013145-66013242
98
DAPK2_MOUSE
1-31
31
2
A:3-21
B:3-21
19
19
1.3a
ENSMUST00000034944
3a
ENSMUSE00000532497
chr9:
66068341-66068562
222
DAPK2_MOUSE
31-105
75
2
A:21-95
B:21-95
75
75
1.4
ENSMUST00000034944
4
ENSMUSE00000219243
chr9:
66079520-66079658
139
DAPK2_MOUSE
105-151
47
2
A:95-141
B:95-141
47
47
1.6
ENSMUST00000034944
6
ENSMUSE00000219242
chr9:
66094224-66094353
130
DAPK2_MOUSE
152-195
44
2
A:142-185
B:142-185
44
44
1.7
ENSMUST00000034944
7
ENSMUSE00000532496
chr9:
66098144-66098192
49
DAPK2_MOUSE
195-211
17
2
A:185-201
B:185-201
17
17
1.8
ENSMUST00000034944
8
ENSMUSE00000219247
chr9:
66098882-66098908
27
DAPK2_MOUSE
211-220
10
2
A:201-210
B:201-210
10
10
1.9
ENSMUST00000034944
9
ENSMUSE00000219240
chr9:
66102278-66102430
153
DAPK2_MOUSE
220-271
52
2
A:210-261
B:210-261
52
52
1.10
ENSMUST00000034944
10
ENSMUSE00000219246
chr9:
66103138-66103183
46
DAPK2_MOUSE
271-286
16
2
A:261-276
B:261-276
16
16
1.11b
ENSMUST00000034944
11b
ENSMUSE00000219241
chr9:
66116486-66116575
90
DAPK2_MOUSE
287-316
30
2
A:277-301
B:277-301
25
25
1.12
ENSMUST00000034944
12
ENSMUSE00000219245
chr9:
66116674-66116757
84
DAPK2_MOUSE
317-344
28
0
-
-
1.13b
ENSMUST00000034944
13b
ENSMUSE00000377023
chr9:
66119434-66120049
616
DAPK2_MOUSE
345-370
26
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2yaba_ (A:)
1b: SCOP_d2yabb_ (B:)
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(
)
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Folds
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Mouse (Mus musculus) [TaxId: 10090]
(33)
1a
d2yaba_
A:
1b
d2yabb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_2yabB01 (B:13-275)
1b: PFAM_Pkinase_2yabB02 (B:13-275)
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Clans
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(
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(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Mus musculus (Mouse)
(25)
1a
Pkinase-2yabB01
B:13-275
1b
Pkinase-2yabB02
B:13-275
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